Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5440g00002 | ATGCCCTTAGCCCAAGATCCATTCTACGTTGTGAAGGAAGAGATTCAAGAATCTATTGATAAGTTGCAATCTGCTTTTCACCAATGGCAAAGTGCTCCTTCTGGTGCTGGCGAGCGACTGAATCTTTCAAAGGAACTGCTTGCCAGTTGTGAAAGCATTGAGTGGCAGGTAGATGAATTGGAGAAAGCAATTGCTGTGGCAGCTAGAGATCCATCTTGGTATGGCATTGATGAACCAGAGCTTGAAAATCGGAGAAGATGGACCAGCAGTGCTCGGAGTAAGGTGGGCAAAGTAAAGGAAACGGTTGAGGCTGGAAAGGGATCAAATATGGTGACCCGTGATAATGTGGAAATGCATCGAGAATTGATGAGGCTCCCCAATTCCCATCAAGTTGATACATCTAACCAGTATGCTGCCCATGATAATGACGATTTCATATCATCTGAATCAGATAGACAGCTGCTTCTAATAAAGCAACAGGATGAGGAGTTGGATGAGCTTAGTGCCAGTGTACAAAGAATTGGAGGTGTTGGGCTCACAATACATGAAGAACTCCTTGCACAGGAAAAGATTGTGGATGAACTGGGTGCTGAAATGGACAGTACGTCAAATCGTCTAGACTTTGTCCAGAAAAAAGTAGCGATGGTGATGAAGAAGGCTGGCGCGAAGGGCCAGATCATGATGATACTGGCTTTGGTGGCCCTGTTCATTTTCCTTTTTATTTTGGTATTCTTCACCTAG | 741 | 0.4453 | MPLAQDPFYVVKEEIQESIDKLQSAFHQWQSAPSGAGERLNLSKELLASCESIEWQVDELEKAIAVAARDPSWYGIDEPELENRRRWTSSARSKVGKVKETVEAGKGSNMVTRDNVEMHRELMRLPNSHQVDTSNQYAAHDNDDFISSESDRQLLLIKQQDEELDELSASVQRIGGVGLTIHEELLAQEKIVDELGAEMDSTSNRLDFVQKKVAMVMKKAGAKGQIMMILALVALFIFLFILVFFT | 246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5440g00002 | 246 | CDD | SNARE_Qc | 157 | 214 | - | - | |
| Pral5440g00002 | 246 | SUPERFAMILY | t-snare proteins | 5 | 102 | IPR010989 | GO:0016020|GO:0016192 | |
| Pral5440g00002 | 246 | Pfam | Syntaxin 6, N-terminal | 6 | 99 | IPR015260 | GO:0016020|GO:0048193 | |
| Pral5440g00002 | 246 | ProSitePatterns | Syntaxin / epimorphin family signature. | 160 | 199 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Pral5440g00002 | 246 | Coils | Coil | 43 | 70 | - | - | |
| Pral5440g00002 | 246 | FunFam | Syntaxin 10 | 3 | 105 | - | - | |
| Pral5440g00002 | 246 | Coils | Coil | 12 | 32 | - | - | |
| Pral5440g00002 | 246 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 154 | 216 | IPR000727 | - | |
| Pral5440g00002 | 246 | CDD | SNARE_NTD_AtSYP61-like | 5 | 103 | - | - | |
| Pral5440g00002 | 246 | PANTHER | SYNTAXIN | 13 | 237 | IPR045242 | - | |
| Pral5440g00002 | 246 | Coils | Coil | 192 | 212 | - | - | |
| Pral5440g00002 | 246 | Pfam | SNARE domain | 191 | 242 | IPR000727 | - | |
| Pral5440g00002 | 246 | Gene3D | - | 161 | 225 | - | - | |
| Pral5440g00002 | 246 | SUPERFAMILY | SNARE fusion complex | 153 | 216 | - | - | |
| Pral5440g00002 | 246 | FunFam | syntaxin-61 isoform X1 | 157 | 218 | - | - | |
| Pral5440g00002 | 246 | SMART | tSNARE_6 | 149 | 216 | IPR000727 | - | |
| Pral5440g00002 | 246 | Gene3D | - | 4 | 105 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5440g00002 | Pral-Chr5440 | 169533 | 172990 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5440g00002 | 56 | 246 | SNARE and Associated Proteins | AT1G28490 | 69.634 | 1.81e-92 | 269 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5440g00002 | K08500 | - | qsu:112025744 | 350.517 |