Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5439g00002 ATGGTTAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGGCCACCAGAAAAGCCAGTGCTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACCCTAGCAAATTATACCCCTTTACATGCTCGGTCAGAAACCGATGATTATGAGGATCAAAGGCTTTGTAGGGCAAAGAACATATCATTAATTAAGAACAAAGAAGTGAAATTGCTCAAACGAAAGCAGAACCATGATAATTTAGTATCTGGATGGGTTGCCTCTGGTTACAACCAGGGATCTCAAAAGGTTATAGATGAAGATGCAAGCAATAGATCAAGTTCAGGATCAGCTGTTTCTTACTCAGAGAGCTGTGCTCAATTTGCTGGAACAGATGCTAGCGACTTGACAGGTCCTGCTCAGTCAGTGGTGAGGGATGGCATGGTGCCCTCAAAAAAGAGATCCTGTGTGAACCGTCAAAAGCCATCTTCTGTTGAGAAGCTCACAAAAGATTTATATACTATCCTTCATGAACAGCAGTCCTATTTCTCTGCATCTTCTGAAGAGGATCTCATTTTTGATAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTCATTAGGCATCCTAGCTCTATAGCCCGTGAAGAAGAATCTGAGGCTAGTTCCCTTTCAGTTGATAACAAGCAATGCCCAACGAGTGAGGCATATTCATACTCTGGTGCTGTTGATATGCGTAATGATTTCACTGGCATGAATTTTCCATCTCAGGGAGTTGAAAATATCAACTACTCTGCTAGCCCAGGAATTCAGCGGGAGAAACTGAAAAGGGAGCCTGAAACTTCACAAATCCTTGGATATCCTGACTCACCACTGTGCTTGATAGATTTAACGGATGTTGTAAACTCTGAGGTGTTCTTCACGAACATGACGAATGAGGACCAGCAAAAATTACTGAAGTGTCTCCCTGCAGTTGATACTGCTAAACTTCCTGACAGCCTTAAAACCATGTTCAACAGCTTTCAGTTCAGAAAGAACTTAACTTACTTTCAACAGCTTCTCGGGGAAGGTGTCTTTGATACCTCTTCACTGGGGTCAAACGCTGGTGATTGCCAGGCTTTGAAACGGCTCGCATTATGTGATTTTTCACAGTCAAAATGGGTGGAGCAATACGATTTACTTAAGAGATGCAAATACCGAGATGAAAAATCTGTTGCTTTTGGATGTACTGGCACTGCATCCAGTAATGCTGCAAACGAGAAGAGATTATGTGACAGCACAGAACAAACTTTTCCTGAACTGAAGTCAACAGTTAAGAGCCCCCAAAGGGTGATCATGAGGGCTGGTAGTGAGGGCAAGGAAGTCTTTGGAGATGGCTCTTGCTTCAGTCCAAAAGGCCTATTGGCTTTGCCCACTGATGGCAGCCCCCAAATGCTGGATTCTTTCAACTTCGTCGACGAGAGTTCTGATCAAGATCTGTTGCTCGAAGTGCGATCTAACAGTTCTTTTCCAGAAGCAGAACTGCTGCATCCAGCCTTAAGATTTGGTACTCAGCCCAGCAATAGCAGTAGCTCGGCATACCAGCATGTTGCCTATTACTGA 1614 0.4411 MVKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARSETDDYEDQRLCRAKNISLIKNKEVKLLKRKQNHDNLVSGWVASGYNQGSQKVIDEDASNRSSSGSAVSYSESCAQFAGTDASDLTGPAQSVVRDGMVPSKKRSCVNRQKPSSVEKLTKDLYTILHEQQSYFSASSEEDLIFDSETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDNKQCPTSEAYSYSGAVDMRNDFTGMNFPSQGVENINYSASPGIQREKLKREPETSQILGYPDSPLCLIDLTDVVNSEVFFTNMTNEDQQKLLKCLPAVDTAKLPDSLKTMFNSFQFRKNLTYFQQLLGEGVFDTSSLGSNAGDCQALKRLALCDFSQSKWVEQYDLLKRCKYRDEKSVAFGCTGTASSNAANEKRLCDSTEQTFPELKSTVKSPQRVIMRAGSEGKEVFGDGSCFSPKGLLALPTDGSPQMLDSFNFVDESSDQDLLLEVRSNSSFPEAELLHPALRFGTQPSNSSSSAYQHVAYY 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5439g00002 537 Gene3D - 3 86 IPR013088 GO:0006355|GO:0008270
Pral5439g00002 537 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Pral5439g00002 537 Gene3D - 293 389 IPR038108 -
Pral5439g00002 537 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Pral5439g00002 537 PANTHER OSJNBB0038F03.10 PROTEIN 7 529 IPR044589 -
Pral5439g00002 537 Pfam Asx homology domain 276 366 IPR028020 -
Pral5439g00002 537 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 45 - -
Pral5439g00002 537 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 292 401 IPR044867 -
Pral5439g00002 537 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Pral5439g00002 537 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Pral5439g00002 537 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5439g00002 Pral-Chr5439 27063 33371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5439g00002 1 514 C2C2-Gata Transcription Factor Family AT4G17570 49.718 6.32e-139 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral5439g00002 ASXH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5439g00002 - - gmx:100798504 707.212