Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5436g00008 ATGGATCTTAAGGGCACTATTCCTCCACATTTAGGGAATCTCTCATTCCTTGTTGAACTTGATCTTGGTGACAACTATTTTCATGGTCAAATACCTGAAGAGTTAGTTGAATTGCGTAGATTGAAACAATTGAATTTGAGCTACAATGATTTTCATGGGCAAGTTCCATTACAAATTGGAGCTTTATCTTTACTTGAGCAGTTACATCTTCAAAATAACAGTCTTGATGGATTCATTCCACTATCTCTATTTAATTTGTCAAGGTTGGTAGCTTTAGATTTGATTTATAATTTTATTGAAGGGACCATTCCACTTGAGGTAGGCAGACTTGAGCAGTTGCAGCTTTTACGACTTGGGCGTAACAAACTTTCAGGAGCTATACCCCAAACAATTTCCAACTTATCTTCACTTGAGTTATTAAGTTTATCTTATAACAGTTTGTCAGGAGGCATCCCCAATGAGATCGGTGATCTTTCACGACTAAAATCATTGCATCTTGGAGTGAATCAACTTACTGGTTCAATACCATCTTCATTATTTAATATTTCAACGCTGCAACATATTGCATTTGGAAGGAATCATTTATCTGGTACTCTCCCAACAAATATATGTTTGGGACTTCCAAAACTTGAATTATTTTATGCACACGGAAATGATTTATCTGGCAAAATACCCTCAGTTTGGCATCAATGCACTGCAGTAGTCGAGTTACAATTAGGTGGCAACAAGTTTAACAAAGGAAAGATACCAAGTGGGATTGGAAATTTGACCAAACTCCACTCATTATCTCTTAGCGACAGCAACTTGCAAGGTGGAATTCCTTCATTTCTTTGGAACATGTCCTCCCTGAGAGAGGTTATCCTTGCATTCAATCATTTAAATGGTAATTTGTCAGAAGAAATGTGTCATCAACTTCCTTTACTAGAAGCATTCGTTGTTAATGATAATCAATTAGAGGGAAGCATTCCACAATCAATAAATAACTGCACATCTTTGCAAGAATTATATTTGGATGGCAACTCATTGACAGGTTTTGTACCCAAAGGCATAGGCAAACTTGATAAACTTGAAGTCTTAGACTTGACCCTTAATCATTTGAGAGGACCTCTTCCTTCCAATATATTCAACATTTCAACATTGACAATCTTGCGGCTTGGTGAAAATTCCTTCTCTGGCCTTCTCCCGCCATATTTAGGAGTTGGCCTTTTCAACCTAAAGATATTATTGTTGGGGCCAAATGAATTAACTGGAGAAATTCCAAGCAGCATATCTAATGCTTCTAAGCTCATTACATTAGATATGTCATGGAATAAAATTAGTGGAGCTATACCCAATGTGCTTGGAAACTTATCAAACTTGATAGAATTAGGTTTGCATTGGAATAATTTGAATGGGTTGATTCCTGGTACATTTAAGAAATTACATAGCCTTCAAGGCTTGAGCCTCAATAACAATAGATTGCAAGGGTCCATTATAAATGAACTTTGCCAACTCAAAAGTCTAAGTGAGTTGAATCTTGCCAACAACATGTTTTCAGGAGTAATTCCAAGATGCCTTAATAATACTTCCCTGAGAAAGATGAATTTTAGCTATAACAAATTGATTTCTCATATACCTTCTTCTCTTTGGAGTCTCGTGGATATCTTGGTTTTAGACCTATCCTCCAACGCATTGAATGGAACAATTCCACTTGAGATATCAAACTTGAGAGCGATTACACTATTGGACATGTCAAGAAATCAAATTTCAGGTAACATTCCTACAACCATGGGTGGCATGCAAACTTTGATAACCTTATCTCTAGCCCAAAACAAATTACAGGGGCCTATTCCTGAATCACTTGGTGGAATGATTAGTATGGAGTCTATGGATCTTTCCCACAATTATTTGTCTAGTGTTATTCCAAAGTCATTGGAATCATTAATCCGTCTTAAATACATTAATCTTTCCTACAATTTATTGCATGGAGAAATTCCAAAGGGTGGGCCCTTTCAAAATTTCACAGCCAAATCTTTTACAATGAATAGAGATCTTTGTGGGAAGTCTCAACTACAAGTCCATCCATGTAAGGAAGAAAACAAGCACATGTCAAATAAAGTGATGATGCTAATAATAAGCTCATTGCTTGTCATAATTATCATTTTGGTTGTTTCATGCTATGTCTTCCTCAAGCATAAGAGAGACCATGTCAATAAACCAAGCAACATGGATTTAACAAATGTGGACACAACAACCAAGATATCCTATTATGAGCTTCTACGAGCAACAAATAGATTTGATGAGAGTAATTTTCTTGGCTTTGGAAGTTTTGGATCAGTATACAAAGCAATTCTTTCAAATCAAGAAATAGTTGCTGTTAAAGTATTTAATTCAAACATGGAAGAGGCCCTAAGGAGTTTTGATAATGAGTGCACCGCCTTATGCAACTTACGTCATCGTAATCTCATTAAGGTTATTAGTAGTTGCTCAAATGATGATTTTGCATGTCTAATAATGGAATTCATGTCAAATGGAAGTCTTGATAAATGGTTGTACTCTCATAATTATTGTTTGGATATCCTACAAAGGTTGAATATAATGGTTGATGTGGCTACTGCATTGGAATATCTTCATCATGGTTCTTCGATTCCGGTTGTTCATTGTGACATAAAACCAAGCAATATCTTGTTAGATGAAGATATGGTGGCTCATCTTAGTGATTTTGGTATAACTAAACTATTAGATGAAGAAAAGTTGGAAACTTATACAAAAACATTGGCTACAGTTGGCTACATGGCACCAGAATACGGATCAAAAGGAGTGGTTTCCTTCAAAGGAGATGTGTATAGCTATGGTATCTTGCTAATGGAAATGTTTACGAGGAAGAAGCCAACCGATGAAATGTTTGTTGAAGGTCTATGTTTAAAAGATTGGGTTAGCAAATCAACACCACATTCAATCATCAATATTCTAGATGCCAATTTACTGCACAGAGGGAGTCCAGATATTAGCAGTATATTACCACTTATATCATCAATTTTTGAGTTGGCATTAAGTTGTTGCATTGAACCACCTGAAGCAAGAATTATGATAACTGATGTTTTGGTGTCATTGGAAAAAACAAGGTCATGTTTATGCAAAATGTTATATATGCACCACTAG 3141 0.3578 MDLKGTIPPHLGNLSFLVELDLGDNYFHGQIPEELVELRRLKQLNLSYNDFHGQVPLQIGALSLLEQLHLQNNSLDGFIPLSLFNLSRLVALDLIYNFIEGTIPLEVGRLEQLQLLRLGRNKLSGAIPQTISNLSSLELLSLSYNSLSGGIPNEIGDLSRLKSLHLGVNQLTGSIPSSLFNISTLQHIAFGRNHLSGTLPTNICLGLPKLELFYAHGNDLSGKIPSVWHQCTAVVELQLGGNKFNKGKIPSGIGNLTKLHSLSLSDSNLQGGIPSFLWNMSSLREVILAFNHLNGNLSEEMCHQLPLLEAFVVNDNQLEGSIPQSINNCTSLQELYLDGNSLTGFVPKGIGKLDKLEVLDLTLNHLRGPLPSNIFNISTLTILRLGENSFSGLLPPYLGVGLFNLKILLLGPNELTGEIPSSISNASKLITLDMSWNKISGAIPNVLGNLSNLIELGLHWNNLNGLIPGTFKKLHSLQGLSLNNNRLQGSIINELCQLKSLSELNLANNMFSGVIPRCLNNTSLRKMNFSYNKLISHIPSSLWSLVDILVLDLSSNALNGTIPLEISNLRAITLLDMSRNQISGNIPTTMGGMQTLITLSLAQNKLQGPIPESLGGMISMESMDLSHNYLSSVIPKSLESLIRLKYINLSYNLLHGEIPKGGPFQNFTAKSFTMNRDLCGKSQLQVHPCKEENKHMSNKVMMLIISSLLVIIIILVVSCYVFLKHKRDHVNKPSNMDLTNVDTTTKISYYELLRATNRFDESNFLGFGSFGSVYKAILSNQEIVAVKVFNSNMEEALRSFDNECTALCNLRHRNLIKVISSCSNDDFACLIMEFMSNGSLDKWLYSHNYCLDILQRLNIMVDVATALEYLHHGSSIPVVHCDIKPSNILLDEDMVAHLSDFGITKLLDEEKLETYTKTLATVGYMAPEYGSKGVVSFKGDVYSYGILLMEMFTRKKPTDEMFVEGLCLKDWVSKSTPHSIINILDANLLHRGSPDISSILPLISSIFELALSCCIEPPEARIMITDVLVSLEKTRSCLCKMLYMHH 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5436g00008 1046 Gene3D Phosphorylase Kinase; domain 1 740 834 - -
Pral5436g00008 1046 FunFam Leucine-rich repeat receptor protein kinase EMS1 2 82 - -
Pral5436g00008 1046 SUPERFAMILY L domain-like 427 681 - -
Pral5436g00008 1046 FunFam Leucine-rich repeat receptor-like protein kinase TDR 132 399 - -
Pral5436g00008 1046 ProSitePatterns Serine/Threonine protein kinases active-site signature. 878 890 IPR008271 GO:0004672|GO:0006468
Pral5436g00008 1046 PANTHER OS04G0122200 PROTEIN 438 1029 - -
Pral5436g00008 1046 Gene3D Ribonuclease Inhibitor 104 204 IPR032675 -
Pral5436g00008 1046 Pfam Protein kinase domain 761 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5436g00008 1046 Gene3D Transferase(Phosphotransferase) domain 1 835 1040 - -
Pral5436g00008 1046 SMART serkin_6 759 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5436g00008 1046 Gene3D Ribonuclease Inhibitor 400 692 IPR032675 -
Pral5436g00008 1046 SUPERFAMILY Protein kinase-like (PK-like) 738 1032 IPR011009 -
Pral5436g00008 1046 SMART LRR_typ_2 522 545 IPR003591 -
Pral5436g00008 1046 SMART LRR_typ_2 617 640 IPR003591 -
Pral5436g00008 1046 SMART LRR_typ_2 134 157 IPR003591 -
Pral5436g00008 1046 SMART LRR_typ_2 329 352 IPR003591 -
Pral5436g00008 1046 SMART LRR_typ_2 110 133 IPR003591 -
Pral5436g00008 1046 SMART LRR_typ_2 498 521 IPR003591 -
Pral5436g00008 1046 SMART LRR_typ_2 353 377 IPR003591 -
Pral5436g00008 1046 SMART LRR_typ_2 569 593 IPR003591 -
Pral5436g00008 1046 SMART LRR_typ_2 158 182 IPR003591 -
Pral5436g00008 1046 SMART LRR_typ_2 62 86 IPR003591 -
Pral5436g00008 1046 SMART LRR_typ_2 450 473 IPR003591 -
Pral5436g00008 1046 SMART LRR_typ_2 14 38 IPR003591 -
Pral5436g00008 1046 SMART LRR_typ_2 280 304 IPR003591 -
Pral5436g00008 1046 SUPERFAMILY RNI-like 3 342 - -
Pral5436g00008 1046 ProSitePatterns Protein kinases ATP-binding region signature. 765 787 IPR017441 GO:0005524
Pral5436g00008 1046 Pfam Leucine rich repeat 452 510 IPR001611 GO:0005515
Pral5436g00008 1046 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515
Pral5436g00008 1046 Pfam Leucine rich repeat 596 654 IPR001611 GO:0005515
Pral5436g00008 1046 Pfam Leucine rich repeat 308 366 IPR001611 GO:0005515
Pral5436g00008 1046 ProSiteProfiles Protein kinase domain profile. 759 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5436g00008 1046 Gene3D Ribonuclease Inhibitor 303 399 IPR032675 -
Pral5436g00008 1046 Gene3D Ribonuclease Inhibitor 205 302 IPR032675 -
Pral5436g00008 1046 Gene3D Ribonuclease Inhibitor 1 103 IPR032675 -
Pral5436g00008 1046 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 835 1043 - -
Pral5436g00008 1046 FunFam Serine-threonine protein kinase plant-type 739 834 - -
Pral5436g00008 1046 SUPERFAMILY L domain-like 321 420 - -
Pral5436g00008 1046 FunFam Inactive leucine-rich repeat receptor-like protein kinase 400 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5436g00008 Pral-Chr5436 102023 114788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5436g00008 570 659 Receptor kinase-like Gene Family AT3G47570 33.333 5.80e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pral5436g00008 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5436g00008 - K13420 pcin:129285519 1115.91