Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5432g00003 ATGGCTACTGTAGCTGCAGCTCGAGGAATAGGCGTCGGAGCAACGAAGCTTCACCAAAGACCCCATCATGTTCACTCCAACAACAGCAACAAGTCGCTCTTTTTGGGTCAAAAACTTCGGAATAAACCCTCTGTTACAGAATCTTCAGGCAGTGGAAGAGTTACGACCTTCTCGAACCCCAAATCGTTCGTGGTCTGTGCATTGGGAGGCGAATGGCTCGATTCGATTCACCACTTATTTGTGGGTGTTGGGGTTGGGCTTCCTTGCACGGTTATGGAGTGTGGCGATATAATCTACAGAAGCACTCTTCCGAAGTCGAATGGCCTGACGATTACAGCTCCTGGGGTGGTTTTGGCTCTCGGTGCTGTGTCCTACCTCTGGGCTACGCCTGGTGTGGCCCCTGGTTTCTTTGACATGTTTGTTCTTGCCTTTGTTGAAAGATTGTTCAGAACTACTTATAGAAAGGATGACTTTGTCCTAGGGAAGAAGTTGGGTGAGGGATCCTTTGGTGTAGTTTATAGGATTTCATTGACTAAGAAGCCCTCTTCAAAGGAAGGTGACTTGGTCTTGAAGAAGGCTACTGAATTTGGTGCAGTAGAAATTTGGATGAATGAGCGTGTTCGGAGAGCTTGTGCAAATAGCTGTGCTGATTATGTTTATGGTTTCCTTGAGAGTTCTGGGAAGAAGGATGGTGAATACTGGCTTATATGGAAATTTGAAGGGGATGCCACACTAGCAGACCTAATGCAGAGTAAAGAGTTCCCATATAATGTTGAAACAATGATTCTGGGCAAGGTCCAGGACTTGCCTAAGGGATTGGAAAGAGAAAATAGAATAATTCAAACAATCATGAGGCAGATCTTTTTTGCATTGGATGGTCTTCACTCAACTGGAATCGTGCATAGGGATATTAAGCCCCAGAATATTATTTTCTCTGAAGGATCTCGTACATTCAAGATTATTGATCTTGGAGCTGCAGCAGATTTGAGGGTGGGCATCAACTATATTCCTAACGAGTTTCTTTTGGATCCAAGATATGCTGCCCCAGAGCAGTACATCATGAGCACACAAACTCCCTCTGCACCCTCTGCTCCAGTTGCAACTGCACTTTCCCCAGTCCTATGGCAGTTGAATCTACCGGACAGATTTGATATCTATAGTGCTGGCCTAATATTTCTACAAATGGCATTCCCTGGATTACGCTCCGATAATTGCCTCATACAATTTAACCGTCAGTTGAAGAGGTGTGACTATGACTTGGTTGCATGGAGAAAAAGTGTAGAACCCCGTTGTGGTCCTGAACTAAGGAGAGGCTTTGAGCTTCTGGATTTAGATGGTGGAATAGGATGGGAACTTCTGACATCAATGGTCCGCTACAAAGCAAGGCAACGACTCAGTGCAAAAGCGGCATTAGCTCATCCTTACTTTGACAGGGAAGGGTTGTTGGCGCTATCTTTCATGCAAAATCTAAGACTGCAGCTCTTACGAGCAACACAGCAAGATTATGGTGAAGCAGCCAAATGGATTATTCAGCTCATGGCAAAGTCTGGAACCTCACAAGTTGGAGGATTTACTGAAGCCCAACTCCAGGAACTAAGAGAAATTGAACCAAAGAAGAAGAATAATGCACAAAGGAATGCTCTAGCCTCTGCTCTCAAACTTCAGAGGAAAATCATAAAAACATTGAATGAGAATGTGGATGAGCTTAACCAACGCAGGAAAAGCCTTTGGTGGAGCAGATGGATCCCCAGGGAAGAATGA 1761 0.4486 MATVAAARGIGVGATKLHQRPHHVHSNNSNKSLFLGQKLRNKPSVTESSGSGRVTTFSNPKSFVVCALGGEWLDSIHHLFVGVGVGLPCTVMECGDIIYRSTLPKSNGLTITAPGVVLALGAVSYLWATPGVAPGFFDMFVLAFVERLFRTTYRKDDFVLGKKLGEGSFGVVYRISLTKKPSSKEGDLVLKKATEFGAVEIWMNERVRRACANSCADYVYGFLESSGKKDGEYWLIWKFEGDATLADLMQSKEFPYNVETMILGKVQDLPKGLERENRIIQTIMRQIFFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPNEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPGLRSDNCLIQFNRQLKRCDYDLVAWRKSVEPRCGPELRRGFELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDREGLLALSFMQNLRLQLLRATQQDYGEAAKWIIQLMAKSGTSQVGGFTEAQLQELREIEPKKKNNAQRNALASALKLQRKIIKTLNENVDELNQRRKSLWWSRWIPREE 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5432g00003 586 SMART serkin_6 158 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5432g00003 586 Coils Coil 552 572 - -
Pral5432g00003 586 Gene3D Transferase(Phosphotransferase) domain 1 266 480 - -
Pral5432g00003 586 ProSitePatterns Protein kinases ATP-binding region signature. 164 191 IPR017441 GO:0005524
Pral5432g00003 586 CDD STKc_SNT7_plant 162 476 - -
Pral5432g00003 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672|GO:0006468
Pral5432g00003 586 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 70 561 - -
Pral5432g00003 586 FunFam Serine/threonine-protein kinase STN7, chloroplastic 267 481 - -
Pral5432g00003 586 SUPERFAMILY Protein kinase-like (PK-like) 143 478 IPR011009 -
Pral5432g00003 586 Pfam Protein kinase domain 160 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5432g00003 586 Gene3D Phosphorylase Kinase; domain 1 143 238 - -
Pral5432g00003 586 ProSiteProfiles Protein kinase domain profile. 158 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5432g00003 Pral-Chr5432 43431 48525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5432g00003 276 477 Core Cell Cycle Gene Families AT2G38620 31.925 1.90e-18 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Pral5432g00003 Pkinase 2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5432g00003 - - qsu:111999120 952.584