Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral542g00001 | ATGGCCATTCATGATCAAAATGGAGTCACCAGACCTCACGGCAGCATTCCAGTAGGAAATGGAGTATCTTTGAGCTCTGGACTACATCCCGTTGCACGGGCTCATCTAAATGATCAATTTTCTTGTGCGAATGACTATGCTCCAAAGGTAAGGAAACCGTATACTATCACAAAACAAAGAGAGAGATGGACAGATGAAGAGCACAAGAAGTTTCTTGAAGCTTTAAAATTGTACGGGCGGGCATGGCGAAAGATTGAAGAACATGTTGGCACAAAGACCACAGTTCAGATT | 291 | 0.433 | MAIHDQNGVTRPHGSIPVGNGVSLSSGLHPVARAHLNDQFSCANDYAPKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRKIEEHVGTKTTVQI | 97 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral542g00001 | 97 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Pral542g00001 | 97 | Pfam | Myb-like DNA-binding domain | 60 | 97 | IPR001005 | - | |
| Pral542g00001 | 97 | ProSiteProfiles | SANT domain profile. | 58 | 97 | IPR017884 | - | |
| Pral542g00001 | 97 | CDD | SANT | 62 | 97 | IPR001005 | - | |
| Pral542g00001 | 97 | PANTHER | SWI/SNF COMPLEX-RELATED | 43 | 97 | - | - | |
| Pral542g00001 | 97 | Gene3D | - | 62 | 97 | - | - | |
| Pral542g00001 | 97 | ProSiteProfiles | Myb-like domain profile. | 55 | 97 | IPR001005 | - | |
| Pral542g00001 | 97 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 55 | 97 | IPR017930 | - | |
| Pral542g00001 | 97 | SUPERFAMILY | Homeodomain-like | 48 | 97 | IPR009057 | - | |
| Pral542g00001 | 97 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 58 | 97 | IPR006447 | GO:0003677 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral542g00001 | Pral-Chr542 | 5 | 1731 | Dispersed/Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Pral542g00001 | Myb_DNA-binding | 2e-11 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral542g00001 | - | - | pcin:129303890 | 180.259 |