Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5429g00048 ATGGGTCGAGGGAAGATTGAAATCAAAAGGATCGAGAATGCGAACAGCCGGCAAGTTACATTCTCCAAGAGGCGTAATGGATTGCTTAAGAAGGCTCAGGAACTTGCTATTCTCTGTGACGCCGAGGTTGCTGTGATCATTTTCTCTAATACAGGGAAGCTTTTCGAGTTTTCGAGTTCTGGTATGATGCGAACACTTACAAGATACAACAAATGCTTTAATTCTTCAGAGGCTGCTGTGGTGGAATGCAAGACAGAGAAGAAGGAAGATCCTAAGGCAGTGGAGACTCTGAAAGATGAAATTGCAAAGCTAGAAAAGAAGCAGCTGCGGTTATTGGGTAAGGACCTGACTGGGTTGAATTTAAAAGAATTGCATCAGCTTGAGCAGCAACTTAATGAAGCGTTATTGTCTGTCAAGGAGAAGAAGGAGGAATTGCTTTTGGAGCAACTGGAGCAGTCGAGAGTACAGGAGCAAAGGGCAATGTTGGAGAATGAAACTTTGCGCAGGCAGATCGAGGAGCTTCGCTGTTTGTTTCCTATAACTGAGCATGTGGTCCCATCTTTTCTTCAATACCACCATGGGGAAAGAAGGGACGCCCCTGTAAATAATGGTGTCATAAGTTCCAACTTGGTCAGTAACTGTGAAAATGAGAATGGGGATTCAGACACTACCTTGCATTTAGGGTTGCCTACTGATGTTCATCACAAGAGGAAGGCACCTGAGAAAGAAACATTCTCCAATGACTCTGAATCTCAAATGGCTCTACTCTGA 771 0.441 MGRGKIEIKRIENANSRQVTFSKRRNGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMMRTLTRYNKCFNSSEAAVVECKTEKKEDPKAVETLKDEIAKLEKKQLRLLGKDLTGLNLKELHQLEQQLNEALLSVKEKKEELLLEQLEQSRVQEQRAMLENETLRRQIEELRCLFPITEHVVPSFLQYHHGERRDAPVNNGVISSNLVSNCENENGDSDTTLHLGLPTDVHHKRKAPEKETFSNDSESQMALL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5429g00048 256 Pfam K-box region 91 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5429g00048 256 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Pral5429g00048 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Pral5429g00048 256 MobiDBLite consensus disorder prediction 229 245 - -
Pral5429g00048 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5429g00048 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5429g00048 256 MobiDBLite consensus disorder prediction 217 256 - -
Pral5429g00048 256 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Pral5429g00048 256 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5429g00048 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5429g00048 256 Coils Coil 150 177 - -
Pral5429g00048 256 Coils Coil 94 114 - -
Pral5429g00048 256 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Pral5429g00048 256 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral5429g00048 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral5429g00048 256 Coils Coil 121 148 - -
Pral5429g00048 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral5429g00048 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5429g00048 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5429g00048 Pral-Chr5429 584085 588430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5429g00048 1 249 MADS-box Gene Family AT5G13790 56.000 2.70e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5429g00048 K-box 2.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5429g00048 - - zju:107417456 336.265