Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5429g00002 ATGAATATTCCTTCTCGTGTTAGAGTTAGATATAATTGTGAAGTTCTTTATCCACTAAGCACAATTATCCCTACTGATCCCAATAATTACCCCATTAATCCTCCTAATGATGATGATCAATACATCAACATCACAGCTGCTAAATCAGTATGGGACTGGCAAATGTTGGATCCTACACGAGTTGAAAGCTCAACCCTTGTTAATACATATTCCACAACACATGATTTCTTCAACATCTCAAAGAACTCCATAGATCAAATTGCAAACCTTATTCCTTCTCATTTTGGTATCCCTTCATTCTCCGGCAGATGCATGGCAAGAAAGATCTTGGATTCTGCAAGAAACATGCTTAATAATACTCATAAAGACCAGAAGATCTTGTTCATGGCTGTGGCTGCGGAGGCATCTTTGGAAGCCCTGGCGAATCAAAGTCTTATGGCAGTGCCTGCAACTAAATCATTTATTGAGGAATTGGAAACTGTGAAGGTTGAAGAAGAAGAAGAAAAGTTAATAAGTAACTGTGCGATTTGTTTGGAAGATTTCAAAGTTGGATTCTTAGAAGTTACTCGTTTGCCTTGCTCGCATTTATTTCATAAAGCTTGCATTGTTGAATGGCTGCAGAGCGATGGTATCTGTCCTTTGTGTCGTTTTCGAATGCCTATTGAATGA 669 0.3842 MNIPSRVRVRYNCEVLYPLSTIIPTDPNNYPINPPNDDDQYINITAAKSVWDWQMLDPTRVESSTLVNTYSTTHDFFNISKNSIDQIANLIPSHFGIPSFSGRCMARKILDSARNMLNNTHKDQKILFMAVAAEASLEALANQSLMAVPATKSFIEELETVKVEEEEEKLISNCAICLEDFKVGFLEVTRLPCSHLFHKACIVEWLQSDGICPLCRFRMPIE 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5429g00002 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 221 IPR013083 -
Pral5429g00002 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 100 220 - -
Pral5429g00002 222 CDD RING-H2_PA-TM-RING 174 216 - -
Pral5429g00002 222 ProSiteProfiles Zinc finger RING-type profile. 174 216 IPR001841 -
Pral5429g00002 222 Pfam Ring finger domain 173 216 IPR001841 -
Pral5429g00002 222 SUPERFAMILY RING/U-box 156 220 - -
Pral5429g00002 222 SMART ring_2 174 215 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5429g00002 Pral-Chr5429 3492 4224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5429g00002 149 220 C3H Transcription Factor Family AT1G14200 41.667 2.22e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5429g00002 - - pcin:129316560 125.561