Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5428g00012 ATGACGCCCGTGGTCATGGCTTCCCACAAAATTTTGTTGCTCTTGTTTATCAGCTGCCTCTTTTCTCCGACAATTGAAGTACAGGTCACTTATCTTTACCACAACTGCTCTTCCAACAAAACCTTCGCTGTCAATAGTGCTTTTCAATCGGACCGAACCAAACTCTTCTCTTCCTTAGCTTCCGCCAACACCGACTTCTCCAACGCCACCGTCGTCGGTGGCGGCGACACCGTCTACGGCCTCTTCATGTGCCGGGGTGACGTCAACCTCTCCATGTGCCACCAATGCGTCGTCAACGCGACCCAACGATTATCTTCCGAGTGCAGAGTTTCGAAGGAGGCAATAATCTGGTACGACGAGTGCATGGTTCGCTATTCGAACCGTTCCTTCTTCTTCACCGTCGAAACAAGGCCTAGACTGAGCCTCTTGAACACCGGCGAAGTGTCCCAGCTGAGCTTCTTACAGATATTGTTGAGCACGCTTAACGTGACGGCGGACGAGGCAGCTAACGGCACTAAGAAATATGCCACAAGGGAAGCAAGCATATCTGGGTTCGGAACTATGTATTCTCTACTTCAGTGCACGCAGGACCTGTCATCCCAAGATTGCAGAACTTGTCTGACTGCTGTGATCGGAGACCTCTCAACATGGTGCTGTTTGGGGAAACAAGGAGGAAGAGTTCTATATCCCAGTTGCAACGTTCGCTATGAGTTATATCCTTTTTATAAGTCTGATGATCAGCCAGAAGCGACGGCGCCTCCACCGCCTGCACTCTCTCCTCCAACAAGTTCTTCAGATCCTCAAGTTAAAGCGAAAGGTCAGTCAACAAGGACTATTGTGATAGTTGTGGTTTCTTCTGTTGGTGGTCTGGGGATTTTTTTGTGTGTCGCCTACTATCTCTCAAAGAGTCTAATCAAGAAGAGACGCACCGCTCTTCTCAGACAAAAATACTTTGGAAATGAAAGCAATAATTTAGAGCCTCTACAATTTAGTTTGGCCACTATTGAAGCTGCAACAAATAAGTTTTCGCATGAAAAATGTTTAGGCCAAGGTGGATTTGGACAAGTTTACAAGGGTGTTCTTTCAAATGGTCAAGAAATAGCCGTCAAGAGACTTTCAAAAAATTCTTGTCAAGGTGGAGAAGAATTCAAGAACGAGGTTGTATTGATTGCCAAACTACAGCACAGAAATTTGGTGGCCTTGCTTGGATTTTGCATAGAAGAACAAGAGAAAATCCTTGTTTATGAATATGTTCCGAACAAAAGCCTCGACTACTTTCTATTTGGTTCCCAAAAAGGCAAAGTATTAAATTGGGTTGAGCGATGTAAAATCATTGGAGGAGTTGCTCGGGGAATTCTTTATCTCCATGAATATTCTCGTCTTAAAATTATACATCGTGATCTCAAACCAAGTAATATTTTATTAGATGATGAACTGAATCCAAAAATATCAGATTTTGGCTTAGCCAAAATGGTTGCTATCAACACAAATGAAGGAAGTACAAATAGAATAGTTGGGACATATGGTTATATGTCTCCAGAATATGCAATGTACGGACAATATTCTAAAAAATCAGATACTTTTAGCTTTGGAGTTATAATGTTAGAAATTATCAGTGGAAAGAAGAATGCAAGTGGTCTTAGTCAATCACAACATGCTGATGGCCTATTGAGCTATGCCTGGAAGCAATGGAAGGAGGAAAAGTTGCTGGATATATTAGATTCGAATATAAAAGAATTTGGATCATATAATGAAGTGATCAAGTGCATCCAGATTGGTTTGTTATGTGTTCAAGAAGATCCAGATGCAAGACCTACAATTGCTGCGGTTGTTTCATATCTTAGCAATGATTCCATTCAACTGCCATTGCCACAGGAACCTGCCTTCTTTTTACACGGTGGAATGGGGCCTCGTACCAGTGGAAGTAAGGAATCAGGCTCGACCATTGAAGCACATAAGAATAAAATGCCATTTACTGTATTTACTGATCAAGATGCTACAATGGCACGATTATTAGAAGAGGAGTATGACTTACGTGATGCTACATGTATTAAAGAGAAGAAAGAAAGAAAGAAGAATGAAGAGGCTGATGCTATTGTGTTTGATTATGTGATTACAAGGGTTGACAAAAATGGAGAGTGGAGATTGACATATGAGCCATCAAGAGAAGACAAGGAGCCTAACATTACTTGTAGTTGTAAAAAGTTTGAACAGTGGGGAATATTATGTTGTCATGCACTAAGAATATTGTATGATCAAGATGTCAAGCGACTTCCACAAAAATATATTTTAAAGAGGTGGACAAGAGAAGCAAGGTGTGGTGTGGTGTATGATTCTAAGGGAAAGGAAATTGAAGTTGATCCTAAACTAGAATGCTCAAATCGATACAGGCAATTGTGCCCAATGCTTATAAAATTAGCCAATGATGCATCTGAATGCCCAGAGGCATTCTCTATGGTTCATCAAATGGTTCTAGAACTTAGTAAGAAAGTGTCTGAACTTCTTATTAAACATTCGTCAGATGATGTTAGTAGTAAATGTGTTGTTGTTGATGATGATGGTAAGAATGAGGGTGAAGGAATTGGATTCAAGAAGAGGGAACGTAAAAAGATTGATAAAAGTTGGGTTGAGAAGCCTAATCAGAAAAGAAGAACTAGTAGAACTTCAAAAAAACCGACTAATAGGCCTTCACAATGTTCAAAGGAAACTGAAAATACATTAGGGGTAGTTAGCCTGTCAACCCCAGTGCAACATATTCCACCTATGTCAAATACACTGGTGCCAATGCAATATGGTCCTACTATGTCAAATGCACTGCTACCAATGCAATATGGCCCCTCTTTGTTAAATGCAACAATTCCTATGCAATATGGCCCTCCCATGTCAAATACAGTAGCTCCTACGCAGTATGGTCTTCCTATGTCAAATACTCTAGCATCAATGCAACATCATCCACCTATCTCAAATACATCAATGCCAATGCAACATGATTCATTAGTCTCAAAGACGCATGGACTAAGCCAAACCACATTCACAACATTAATGATGGCTCAAATGGACCATGATGTGAAGTCACTTGAAGCACTGCAATTTAGTCAAGCATTTGTAAAAGATGAGGTAACTAACCTATGGTTGGCATTCATCGACTCCACCGGAAAGTCGCCAGATTCAGCTGCTTTCCGCCGCGGTAAGGCAGGGTCAAGTGAAAGCCCCAAGCGCCGAAGTGCGTCTTCGCGAGTCATAGGTCGTAATTCTCTTCACCCTCAATGCTCCACCCACCACAATTTCACCGCCAATAGCACCTTCGACTTTAACCTCAACACCCTCTTTTCTTCCTTAACTTCCAACGAAACCGCCCACCTCGACTTCTACAACACCACCGTTGACGGCGGTGGCGAGACCATATACGGCCTCTTCATGTGCCGGGGCGACGTCAACCAAGACGCATGCCACCAGTGCGTCGTTGAGTCAACTGCAGAGTTAGCTTACTATTGCAGATTTTCGAAGGCGGCCTATGAAGCGGCGAAGCCTGCTTTGATGAAAAAGAAGTCGGCGACGAAAGCGGTGGTGGTAGATATTCAAACTCTGTATGTGATGGTTCAGTGCACGCCGGACCTTTCGCCGGGAGATTGCAGAACGTGTCTGAGTGGTGTGATCGGGAACCTTCCATGGTGTTGTGAGGGCAAGATCGGAGGAAGAGTGGCATATCCAAGTTGCTTCGCTCGCTATGAGCTGTATATGTTCTTTAATTCTTCTACGCCTCTCCGGCCAGTAAGGCTGCCCCCTCCGCCTCCGCCTCCTCCTCCGGCTCCATTAACTCCTCCAACTCCTTCAGATGTAAGAAGGAAAAGGAGATTAAGGACTATTGTGATAGCTGTGGCTTCTCCTGTTGGTGCTGTGATACTTCTATGTTTCTCCTTCTATTTGTCGAAGAATCAAATAAAGAAGATACGTATGGCTTTTCTCATGCAAAAATACTTTGGAAGCGAAAGCAACACTTTAGAGCCTCTGCAATTCAGTTTGGCTACGATTGAAGCCGCGACAAATAAGTTTTCACAGGAAAATTGTTTAGGTCAGGGTGGATTTGGACAAGTTTACAAGGGCATTCTTTCAAATGGTCAAGAACTAGCTGTAAAAAGACTTTCAAAAAGTTCTGGCCAGGGAGTAGAAGAATTTAAGAACGAGGTTTTATTAATAGCCAGACTCCAGCATAGAAATTTGGTGGCCTTGCTAGGATTTTGCATAGAAGGGCAAGAGAAAATTCTCATTTATGAATATGTTCCCAACAAAAGTCTTGATTATTTTCTATTTGGTTCTCAAAAAATCAAAGTACTAAATTGGGAGGAACGATGTAAAATTATAGGAGGAGTTGCTCGAGGAATTCTTTACCTTCATGATTATGCTCGAGTTAAGATTATACATCGTGATCTCAAGCCAAGCAATATTTTGTTAGATAATGAAATGAACCCAAAAATTTCAGATTTTGGCATGGCCAGGATGGTTGGAATCCATGAAATTGAGGAAAGTACGAGTAACATTGTTGGAACCTATGGTTATATGTCTCCGGAATATGCAATGTTTGGACAATATTCTGAAAAATCAGATGTTTTTAGCTTTGGAGTAATAGTATTAGAAATGATCAGTGGAAGGAAGATCACAAGCTCTCAAGATCAATCTCATGGCCTCCTAAACTATGCTTGGAATCAATGGAAGGAAGAAAAGATATTAGATGTATTGGATTCAAGTCTAAATGAACCTGAATCGTTGAATGAAGTGGACAAGTGCATCCAAATCGGGTTGTTATGTGTTCAAGAAAATCCGGAAGCAAGGCCTTCTATGGCTACAGTTGTTTCATATCTTAGCAATGATTCAATTCAATTGCCATTTCCACAAGAACCTGCATTCTTTCTGGAGGGCCAAATGGAGCTTAATACCGACAGTAAAGAATCAATTAATGAAATGTCTATAAGTGAATTCTATCCTCGGTAG 4989 0.4175 MTPVVMASHKILLLLFISCLFSPTIEVQVTYLYHNCSSNKTFAVNSAFQSDRTKLFSSLASANTDFSNATVVGGGDTVYGLFMCRGDVNLSMCHQCVVNATQRLSSECRVSKEAIIWYDECMVRYSNRSFFFTVETRPRLSLLNTGEVSQLSFLQILLSTLNVTADEAANGTKKYATREASISGFGTMYSLLQCTQDLSSQDCRTCLTAVIGDLSTWCCLGKQGGRVLYPSCNVRYELYPFYKSDDQPEATAPPPPALSPPTSSSDPQVKAKGQSTRTIVIVVVSSVGGLGIFLCVAYYLSKSLIKKRRTALLRQKYFGNESNNLEPLQFSLATIEAATNKFSHEKCLGQGGFGQVYKGVLSNGQEIAVKRLSKNSCQGGEEFKNEVVLIAKLQHRNLVALLGFCIEEQEKILVYEYVPNKSLDYFLFGSQKGKVLNWVERCKIIGGVARGILYLHEYSRLKIIHRDLKPSNILLDDELNPKISDFGLAKMVAINTNEGSTNRIVGTYGYMSPEYAMYGQYSKKSDTFSFGVIMLEIISGKKNASGLSQSQHADGLLSYAWKQWKEEKLLDILDSNIKEFGSYNEVIKCIQIGLLCVQEDPDARPTIAAVVSYLSNDSIQLPLPQEPAFFLHGGMGPRTSGSKESGSTIEAHKNKMPFTVFTDQDATMARLLEEEYDLRDATCIKEKKERKKNEEADAIVFDYVITRVDKNGEWRLTYEPSREDKEPNITCSCKKFEQWGILCCHALRILYDQDVKRLPQKYILKRWTREARCGVVYDSKGKEIEVDPKLECSNRYRQLCPMLIKLANDASECPEAFSMVHQMVLELSKKVSELLIKHSSDDVSSKCVVVDDDGKNEGEGIGFKKRERKKIDKSWVEKPNQKRRTSRTSKKPTNRPSQCSKETENTLGVVSLSTPVQHIPPMSNTLVPMQYGPTMSNALLPMQYGPSLLNATIPMQYGPPMSNTVAPTQYGLPMSNTLASMQHHPPISNTSMPMQHDSLVSKTHGLSQTTFTTLMMAQMDHDVKSLEALQFSQAFVKDEVTNLWLAFIDSTGKSPDSAAFRRGKAGSSESPKRRSASSRVIGRNSLHPQCSTHHNFTANSTFDFNLNTLFSSLTSNETAHLDFYNTTVDGGGETIYGLFMCRGDVNQDACHQCVVESTAELAYYCRFSKAAYEAAKPALMKKKSATKAVVVDIQTLYVMVQCTPDLSPGDCRTCLSGVIGNLPWCCEGKIGGRVAYPSCFARYELYMFFNSSTPLRPVRLPPPPPPPPPAPLTPPTPSDVRRKRRLRTIVIAVASPVGAVILLCFSFYLSKNQIKKIRMAFLMQKYFGSESNTLEPLQFSLATIEAATNKFSQENCLGQGGFGQVYKGILSNGQELAVKRLSKSSGQGVEEFKNEVLLIARLQHRNLVALLGFCIEGQEKILIYEYVPNKSLDYFLFGSQKIKVLNWEERCKIIGGVARGILYLHDYARVKIIHRDLKPSNILLDNEMNPKISDFGMARMVGIHEIEESTSNIVGTYGYMSPEYAMFGQYSEKSDVFSFGVIVLEMISGRKITSSQDQSHGLLNYAWNQWKEEKILDVLDSSLNEPESLNEVDKCIQIGLLCVQENPEARPSMATVVSYLSNDSIQLPFPQEPAFFLEGQMELNTDSKESINEMSISEFYPR 1662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5428g00012 1662 ProSiteProfiles Gnk2-homologous domain profile. 1145 1248 IPR002902 -
Pral5428g00012 1662 MobiDBLite consensus disorder prediction 870 906 - -
Pral5428g00012 1662 ProSiteProfiles Gnk2-homologous domain profile. 30 130 IPR002902 -
Pral5428g00012 1662 MobiDBLite consensus disorder prediction 1258 1276 - -
Pral5428g00012 1662 ProSiteProfiles Gnk2-homologous domain profile. 135 241 IPR002902 -
Pral5428g00012 1662 Pfam Salt stress response/antifungal 1193 1246 IPR002902 -
Pral5428g00012 1662 Pfam Salt stress response/antifungal 36 127 IPR002902 -
Pral5428g00012 1662 Pfam Salt stress response/antifungal 1090 1168 IPR002902 -
Pral5428g00012 1662 Pfam Salt stress response/antifungal 154 239 IPR002902 -
Pral5428g00012 1662 MobiDBLite consensus disorder prediction 1053 1081 - -
Pral5428g00012 1662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Pral5428g00012 1662 SMART 26again6 729 756 IPR006564 GO:0008270
Pral5428g00012 1662 Gene3D Transferase(Phosphotransferase) domain 1 418 621 - -
Pral5428g00012 1662 Gene3D Transferase(Phosphotransferase) domain 1 1427 1627 - -
Pral5428g00012 1662 MobiDBLite consensus disorder prediction 1258 1280 - -
Pral5428g00012 1662 FunFam cysteine-rich receptor-like protein kinase 10 418 621 - -
Pral5428g00012 1662 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 646 - -
Pral5428g00012 1662 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1427 1628 - -
Pral5428g00012 1662 Gene3D Phosphorylase Kinase; domain 1 1312 1426 - -
Pral5428g00012 1662 Gene3D Phosphorylase Kinase; domain 1 302 417 - -
Pral5428g00012 1662 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Pral5428g00012 1662 ProSiteProfiles Protein kinase domain profile. 342 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5428g00012 1662 FunFam Cysteine-rich receptor-like protein kinase 25 138 241 - -
Pral5428g00012 1662 MobiDBLite consensus disorder prediction 891 906 - -
Pral5428g00012 1662 MobiDBLite consensus disorder prediction 246 271 - -
Pral5428g00012 1662 SUPERFAMILY Protein kinase-like (PK-like) 325 631 IPR011009 -
Pral5428g00012 1662 ProSiteProfiles Zinc finger SWIM-type profile. 716 754 IPR007527 GO:0008270
Pral5428g00012 1662 FunFam Cysteine-rich receptor-like protein kinase 10 305 417 - -
Pral5428g00012 1662 CDD STKc_IRAK 348 614 - -
Pral5428g00012 1662 CDD STKc_IRAK 1357 1620 - -
Pral5428g00012 1662 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 1314 1426 - -
Pral5428g00012 1662 ProSiteProfiles Protein kinase domain profile. 1351 1635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5428g00012 1662 Gene3D - 1173 1248 IPR038408 -
Pral5428g00012 1662 Gene3D - 28 130 IPR038408 -
Pral5428g00012 1662 Gene3D - 1083 1172 IPR038408 -
Pral5428g00012 1662 Gene3D - 140 241 IPR038408 -
Pral5428g00012 1662 Pfam Protein kinase domain 1352 1617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5428g00012 1662 Pfam Protein kinase domain 343 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5428g00012 1662 SUPERFAMILY Protein kinase-like (PK-like) 1334 1641 IPR011009 -
Pral5428g00012 1662 SMART serkin_6 1351 1620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5428g00012 1662 SMART serkin_6 342 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5428g00012 1662 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 29 129 - -
Pral5428g00012 1662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1472 1484 IPR008271 GO:0004672|GO:0006468
Pral5428g00012 1662 Pfam SWIM zinc finger 727 751 IPR007527 GO:0008270
Pral5428g00012 1662 ProSitePatterns Protein kinases ATP-binding region signature. 1357 1379 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5428g00012 Pral-Chr5428 139286 154492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5428g00012 24 660 Receptor kinase-like Gene Family AT4G05200 45.846 9.09e-177 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral5428g00012 Pkinase 2.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5428g00012 - - pcin:129286093 816.609