Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5424g00002 ATGGATGCTCACCAAGATCCTCTGATGCACATTAACGACTTCCAGCTTCATGACTTCATCGACGACACCAATGTCGATCAGTTTATCAATTTGCTCCGCGGGGAGAATGAACACTCGTTCTGTAACTTTGATTCTGACCATATCAATGGCTACTTGGCTGATAACCAGTTTCCTCCATTCCCTGCAAACCTGTTTGAGTCTAATGCTGCTTTAAATGCTTATGATCCAAGCTCTACGCTTAGTTCCTTCTCATGTTTTGATGGAGAAGTGAAGGGAGGAAGAGGAGAAGAGGAGAATGATTCTTCTGCAACAACAACCACCACCACTGAAACTACCACGTCTGCTAATGCCAAACAGAAGTCCAAAACTGATCGATCCAAGACACTGATCTCTGAAAGGAGGAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAAGTAAGATGGATAAGGCCTCCATCGTGGGCGATGCTGTGGCATATGTGCAGGAGCTGCAAGAGAAAGCTAAGAAGCTGAAGGCTGAGGTTAAAGGCCTTGAAGCCTCTATGCTAGCGTCGGAAAACGACCAAAGATCAGCTAAAATCCCCACGAGTCAAAACAACCACATCCACTATCCGATCTGCATGAAGATCATGCAGATGGACATGTTTCAAGTGGAGGAGAGAGGGTATTACGTGAAATTGGTGTGTAATAAAGGAGAAGGAGTGGCTGCCTCCCTCTACAGGGCTCTCGAGTCCCTAGCAGGCTTCAATGTTCAGAATTCAAACTTGGCCACAGTTTCTGACAGGTTTCTATTAACATTTACATTGAATGTGAAAGGTTGCGAGCCAGAAATTAACCAGCAAAATCTGAAGCTGTGGGTGGCAGGTGCTCTTCTTAACCAAGGCTTCGAATTTATTACAACTTTCCATGCTTGA 939 0.4526 MDAHQDPLMHINDFQLHDFIDDTNVDQFINLLRGENEHSFCNFDSDHINGYLADNQFPPFPANLFESNAALNAYDPSSTLSSFSCFDGEVKGGRGEEENDSSATTTTTTETTTSANAKQKSKTDRSKTLISERRRRGRMKEKLYALRSLVPNISKMDKASIVGDAVAYVQELQEKAKKLKAEVKGLEASMLASENDQRSAKIPTSQNNHIHYPICMKIMQMDMFQVEERGYYVKLVCNKGEGVAASLYRALESLAGFNVQNSNLATVSDRFLLTFTLNVKGCEPEINQQNLKLWVAGALLNQGFEFITTFHA 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5424g00002 312 MobiDBLite consensus disorder prediction 120 134 - -
Pral5424g00002 312 MobiDBLite consensus disorder prediction 99 119 - -
Pral5424g00002 312 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 14 302 - -
Pral5424g00002 312 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 119 189 - -
Pral5424g00002 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Pral5424g00002 312 SMART finulus 129 178 IPR011598 GO:0046983
Pral5424g00002 312 Pfam Helix-loop-helix DNA-binding domain 130 173 IPR011598 GO:0046983
Pral5424g00002 312 Coils Coil 162 196 - -
Pral5424g00002 312 Gene3D - 114 189 IPR036638 GO:0046983
Pral5424g00002 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 188 IPR036638 GO:0046983
Pral5424g00002 312 MobiDBLite consensus disorder prediction 91 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5424g00002 Pral-Chr5424 4280 5941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5424g00002 1 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 51.104 5.88e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5424g00002 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5424g00002 K26214 - gmx:100805451 398.667