Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5423g00078 ATGAGCTTTGTTTTGAGAGGAACAAGAGCAGACATAGAAAGCGGATTTCCTGGATTTATTCCTGAGAGGCATGCATTGCGTGTTCATGCAGCACGACCTACTAATTCCAATTCACTTACTTTTCTTGTCACAGTTCTTCTGCTATTCATGATACTGAACTCTCACCAGATGTCACCAAATTTTCTGCTTTGGCTAGTGCTAGCTGTCTTCTTAATGGCTACAATGTTGAGGATGTACGCAACTTGTCAGCAGCTTCAAGCTGAGGCTCATGCCCATGCAGGAGCAGGCAGTGGTGGACTTCTTGGGCACACTGAAGTACGGTTACATATGCCACCATCAATGGCACTTACCACCCGAGGACGTCTACAAGGCCTAAGACTTCAGCTTGCACTTCTTGATCGGGAGTTTGATGATTTAGATTATGAAACTTTAAGAGCGCTGGATTCAGATAATGCTCCGCCTGCACCTTCTATGACTGATGAAGAGATAAATGCTCTTCCTGTTCACAAATACAAGGGTTCTGGCCTCCAAAACAGGAAATCCTCAATGCAGCAGACCTCATCTTCCACTTTTGCCGAGAAGAAGCATGATACATCAAATGCAGTTGGTAGTACAAAAGCCTCTGATGATGAGCTGACCTGCAGTGTATGTTTGGAGCAAGTTAACGTTGGGGATCTACTCCGTAGCTTGCCCTGCTTACATCAGTTTCATGCCAATTGCATCGACCCATGGCTGCGGCAACAAGGAACATGTCCTGTATGTAAATTCAGAGCAGGATCTACGTGGCATGAAAGTGAACAGAATGAAGTTGATGCTTCGGACATGGTTTGA 831 0.4525 MSFVLRGTRADIESGFPGFIPERHALRVHAARPTNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLAVFLMATMLRMYATCQQLQAEAHAHAGAGSGGLLGHTEVRLHMPPSMALTTRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPPAPSMTDEEINALPVHKYKGSGLQNRKSSMQQTSSSTFAEKKHDTSNAVGSTKASDDELTCSVCLEQVNVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSTWHESEQNEVDASDMV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5423g00078 276 CDD RING-H2_PA-TM-RING 213 255 - -
Pral5423g00078 276 SUPERFAMILY RING/U-box 209 258 - -
Pral5423g00078 276 PANTHER TARGET OF ERK KINASE MPK-1 2 260 - -
Pral5423g00078 276 MobiDBLite consensus disorder prediction 174 205 - -
Pral5423g00078 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 259 IPR013083 -
Pral5423g00078 276 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Pral5423g00078 276 Pfam Ring finger domain 213 255 IPR001841 -
Pral5423g00078 276 SMART ring_2 214 254 IPR001841 -
Pral5423g00078 276 MobiDBLite consensus disorder prediction 175 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5423g00078 Pral-Chr5423 406944 412189 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5423g00078 1 276 C3H Transcription Factor Family AT3G55530 73.285 7.92e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5423g00078 K16283 - gmx:100816448 419.853