Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5423g00073 ATGTCTGCGGGGGCATCTTCTTATTGGTGTTACAGATGCAGTCGGTTTGTGAGGGTCCGGAGGCAGGACGTGGTGGTGTGTCCCGACTGCGACAGTGGATTCGTGGAGGAGATTGAGCAAATGCCTCGGCCTGCATCCATTGTGGATTCGCGGCCGCGGAGGTTCCCGGCGGCTTCTATGTATATGATCGGCAACAACCACCAGAATTCTGGACGCACTCTGCGTCCTGCTTTGAGGAGGGCTCGTCGGAGCGGTGGCGATATTTCTATGGTTAATCCGGTTGTCGTGCTCCGTGGATCTCCTAACCGGGCGAGTCATGATTCCGGCGGTGGACATGGGCGCGGGTTCGAGCTTTACTACGAAGACGGCCCTGGCTCCGGTCTCCGGCCTCTGCCTCCTAACATGTCAGAGATTCTTCTGGGATCTGGAATTGACAGGCTTCTGGAACAGCTTTCTCAGATAGAAATGAACGGTATTTCGCGATACGAGCCACCTCCGGTTTCCAAAGCCGCTATAGATTCATTGCCGACGATCGAGATTCACGAGAGCCATCTTGCGACGGAATCACACTGCGCCGTCTGTATGGAGCCTTTTGAATTGGGCACAACTGCTCGTGAATTGCCTTGCAGGCACATTTACCATTCGGAATGCATCTTGCCGTGGCTCGCTCTCCGGAATACGTGCCCTGTTTGCCGGCAGGAACTCCCGGCAGATACGCAGAACGTTAATGGTCCTGTTTCCGGGCATTCTCTCTCTTGGAACGACGATGACAACGTGGGATTGACCATTTGGAGGCTTCCTGGTGGTGGCTTCGCGGTGGGCAGGTTCGCCGGTGGGAGAAGAAGCTCTTCTGATCGTGAGCTTCCTGTTGTGTACACAGAAATGGACGGTGGCCTTGGAAACGGCGGCGAACCGAGGAGGGTGACTTGGTCGACGACGACAGAGAGTCGAGGAAGAGACAGTAGTGGAGGTGGAGGATTCCGCAAAATGTTTCGCAATCTTTTTGGTTGCTTCAGCCCTGGAGCTCGAGCTCAATTCTCCGCTTCTTCTTCATCTTCTTCTTCTTCTTCCCCAGAACCTCGAACCTTCAGGAGTAATATCTCTCGTTCTCGTCCCATCGTGAATACCACAATGCGCTCCCGAAGAACCTGGTCTCTGGATGGCAACGGCGGAACCAGACCTTGGTAA 1188 0.5471 MSAGASSYWCYRCSRFVRVRRQDVVVCPDCDSGFVEEIEQMPRPASIVDSRPRRFPAASMYMIGNNHQNSGRTLRPALRRARRSGGDISMVNPVVVLRGSPNRASHDSGGGHGRGFELYYEDGPGSGLRPLPPNMSEILLGSGIDRLLEQLSQIEMNGISRYEPPPVSKAAIDSLPTIEIHESHLATESHCAVCMEPFELGTTARELPCRHIYHSECILPWLALRNTCPVCRQELPADTQNVNGPVSGHSLSWNDDDNVGLTIWRLPGGGFAVGRFAGGRRSSSDRELPVVYTEMDGGLGNGGEPRRVTWSTTTESRGRDSSGGGGFRKMFRNLFGCFSPGARAQFSASSSSSSSSSPEPRTFRSNISRSRPIVNTTMRSRRTWSLDGNGGTRPW 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5423g00073 395 SUPERFAMILY RING/U-box 171 241 - -
Pral5423g00073 395 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Pral5423g00073 395 MobiDBLite consensus disorder prediction 294 325 - -
Pral5423g00073 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 238 IPR013083 -
Pral5423g00073 395 MobiDBLite consensus disorder prediction 346 395 - -
Pral5423g00073 395 SMART ring_2 191 231 IPR001841 -
Pral5423g00073 395 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Pral5423g00073 395 Pfam Protein of unknown function (DUF1117) 259 375 IPR010543 -
Pral5423g00073 395 MobiDBLite consensus disorder prediction 346 387 - -
Pral5423g00073 395 MobiDBLite consensus disorder prediction 306 320 - -
Pral5423g00073 395 Pfam Ring finger domain 190 232 IPR001841 -
Pral5423g00073 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 104 236 - -
Pral5423g00073 395 FunFam E3 ubiquitin-protein ligase RING1-like 153 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5423g00073 Pral-Chr5423 400812 402942 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5423g00073 130 241 C3H Transcription Factor Family AT5G01980 41.964 6.00e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5423g00073 K11982 - qsa:O6P43_014338 465.692