Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5423g00053 ATGGCGAATCGGTGGTGGGCTGGGAACGTGGCAATGAGACCTAAAGATCCCTTGTTGTCATCTCCATCACTTCAGCTGAGAAACCCAGAAGATGACCATGGTGGGTTGAGTCGACTCGGGCCAAGACGAGAGCAAGACTTTCTGGAGAACACCAATAACAACACTACTCCAACCAATAGCAGCAATAGCAACACAAACGCCAACACAAACACAACTTCCCAGAGCCTGAACATCGACGAAGACGAGAGCCGACACAACGGTCGCGAAGCAGATGATCAAAACCCTGGCAGCCATGACACCGCCGAGCCGGGAAGCAGCGGCCGACGTCCACGAGGCCGCCCGCCTGGGTCGAAGAACAAGCCGAAGGCACCCGTGGTCGTAACAAAGGAGAGTCCTAATGCCTTCCGGAGCCACGTGTTGGAAATCTCCAGCGGCAGCGATGTTGCTGAGAGCCTCTCCACCTTCGCGAACCGGAGGCACCGTGGTGTGTCAGTCCTCAGCGGAAGTGGCATTGTGACCAACGTCACACTCCGGCATCCGGCGGCGCCAGGTGGGGTTATCACACTAAATGGAAGGTTCGAGATTCTGTCTTTATCCGGCGCATTTTTGCCTGCCCCCTCGCCTCCTGGGGCGACCGGGCTAACTGTGTATCTCTCCGGCGGCCAAGGGCAGGTTGTTGGTGGAAATGTGGTGGGTGCATTGGTCGCATCAGGTCCTGTATTGGTGATAGCAGCCACCTTCGCTAATGCCACTTATGAGAGGTTGCCACTTGAGGATGAACCATCTGGGGAAGATGTTGAAGCCAAAACAACACAGCACCATTCAGGTGTACATTCAGGAACTTCTGGGCCTTCATCAGCATCTCAGACTTTGAATGAACAAGTCTCAATGCCTATGTTCACTAACTTGCCCCCAAATTTGCTTCCAAATAATGATCAAATGCCACATGATGTGTTCTGGGGGCCTCCTGCTCGCCAACCTCCTTACTGA 990 0.5424 MANRWWAGNVAMRPKDPLLSSPSLQLRNPEDDHGGLSRLGPRREQDFLENTNNNTTPTNSSNSNTNANTNTTSQSLNIDEDESRHNGREADDQNPGSHDTAEPGSSGRRPRGRPPGSKNKPKAPVVVTKESPNAFRSHVLEISSGSDVAESLSTFANRRHRGVSVLSGSGIVTNVTLRHPAAPGGVITLNGRFEILSLSGAFLPAPSPPGATGLTVYLSGGQGQVVGGNVVGALVASGPVLVIAATFANATYERLPLEDEPSGEDVEAKTTQHHSGVHSGTSGPSSASQTLNEQVSMPMFTNLPPNLLPNNDQMPHDVFWGPPARQPPY 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5423g00053 329 FunFam AT-hook motif nuclear-localized protein 135 262 - -
Pral5423g00053 329 MobiDBLite consensus disorder prediction 258 272 - -
Pral5423g00053 329 CDD DUF296 136 219 IPR005175 -
Pral5423g00053 329 MobiDBLite consensus disorder prediction 46 77 - -
Pral5423g00053 329 MobiDBLite consensus disorder prediction 258 329 - -
Pral5423g00053 329 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 248 IPR005175 -
Pral5423g00053 329 MobiDBLite consensus disorder prediction 273 309 - -
Pral5423g00053 329 ProSiteProfiles PPC domain profile profile. 132 270 IPR005175 -
Pral5423g00053 329 MobiDBLite consensus disorder prediction 78 96 - -
Pral5423g00053 329 MobiDBLite consensus disorder prediction 31 45 - -
Pral5423g00053 329 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 66 321 IPR014476 GO:0003680
Pral5423g00053 329 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 259 - -
Pral5423g00053 329 Gene3D - 135 273 - -
Pral5423g00053 329 MobiDBLite consensus disorder prediction 1 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5423g00053 Pral-Chr5423 297176 299430 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5423g00053 1 328 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 53.687 9.42e-78 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5423g00053 - - qsa:O6P43_020634 405.986