Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5423g00018 ATGGCTCCTTCAGAAGTCAATCATCTCTCTCACCCTTGTATATATGGGGATTTTGCTTCCTCATACTCCGAGAGGAAGTCTGGATTTATGAAATGGTTTAGTAAGCTTTTCAAAGGTGGGTCCAGTCGAGGAAGGGGAGGTCGTCATCTCCAGCAGCCTACAGAGGAAAATTTGGTCTGGCGCAATCCATCTAGATCTTTGGATGACCGTTCTAGAGCTCAGAAGGACAAAGAGGATCTGGACCGTGCAATTGCACTATCGTTAGCTGAAGATTTGAAGAGACCAAATGCTCGCCAAGGATATAGATGCCATGGAAACTTCGACGAAGATTATGCGGGTGAATTTCAGGATAACCAGAACTCCTCTGCACATCCTCCTTATACCCGTGCAACATGTGGGGAAATTAGGACATGTGGTGGGTGCAAGCGGGAGATAGCCCATGGGAATTGTTTAAAGTGCAATAATACTTTTTTCCATCCAGGGTGCTTTCGTTGTCACTCTTGTCGCTACCCCATTACTGAGCATGAGTTTTCTTTATCAGGGAAGCATCCATATCACAAGTCCTGTTTCAAAGAGTTGACCCACCCAAAATGTGAAGTTTGCTACCGATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGTCATCCTTTTTGGTCCCAAAAATATTGTCCAGCTCATGAATATGATGATACGGCTCGCTGCTGTAGTTGTGAAAGATTGGAGTCTTTGAATACGAAATACTATAGTTTGGAAGATGGACGGAGTTTATGTTTAGAGTGCATGGAGTCAGCTATTATGGACACCGGAGATTGTCAACCTCTTTACCATGCTATTAGAGATTATTATGAAGGAATGAATATGAAAATAGACCAACAAATTCCTATGCTTCTGGTTGAGAGGCAAGCACTCAATGAAGCTATTGTTGGGGATACAAATGGTTACCATCATATGCCAGAGACAAGAGGCTTGTGCCTTTCTGAAGAGCTGACTGTCACCAGTGTTCATCGAAGACCAGGAATTGGAGGCCATAGGCTAATGGGCATGAGAACCCAACCTCAAAAACTATCTAGAAAATGTGAAGTTACAGCCATTCTTGTTCTCTATGGTCTTCCCAGGTTACTCACAGGCGCTATCCTTGCCCACGAGCTGATGCATGGCTGGTTACGCCTTAAAGGGTACCGTAATCTTAATCCTGAAGTAGAGGAAGGAATCTGTCAGGTTCTTTCTTATATGTGGCTTGAGTCAGAAGTGATGCCTGGCCTTAAAAGCATGCCTTCAACTTCAGGAGCTTCTTCTTCCTCATCTTCCTACTACTCCTCATCATCTAAGAAAGGAACTAAATCTGAAGTTGAAAATAAACTGGGTCAGTTTTTCATGAATCAGATTGCCAATGATTCTTCCCCAGCATATGGGGGTGGCTTTAGAGCTGCTAATGAGGCAGTGAACAAATATGGTTTACGTAGTACTCTTGAACATATTCGTTGGACTGGTAATTTCCCACTGTAA 1515 0.4317 MAPSEVNHLSHPCIYGDFASSYSERKSGFMKWFSKLFKGGSSRGRGGRHLQQPTEENLVWRNPSRSLDDRSRAQKDKEDLDRAIALSLAEDLKRPNARQGYRCHGNFDEDYAGEFQDNQNSSAHPPYTRATCGEIRTCGGCKREIAHGNCLKCNNTFFHPGCFRCHSCRYPITEHEFSLSGKHPYHKSCFKELTHPKCEVCYRFIPINAAGLIEYRCHPFWSQKYCPAHEYDDTARCCSCERLESLNTKYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKIDQQIPMLLVERQALNEAIVGDTNGYHHMPETRGLCLSEELTVTSVHRRPGIGGHRLMGMRTQPQKLSRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPGLKSMPSTSGASSSSSSYYSSSSKKGTKSEVENKLGQFFMNQIANDSSPAYGGGFRAANEAVNKYGLRSTLEHIRWTGNFPL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5423g00018 504 ProSiteProfiles LIM domain profile. 136 196 IPR001781 -
Pral5423g00018 504 CDD LIM_DA1 138 190 - -
Pral5423g00018 504 SMART lim_4 137 189 IPR001781 -
Pral5423g00018 504 Pfam LIM domain 138 191 IPR001781 -
Pral5423g00018 504 Pfam Protein DA1 287 498 IPR022087 -
Pral5423g00018 504 ProSitePatterns LIM zinc-binding domain signature. 138 172 IPR001781 -
Pral5423g00018 504 Gene3D Cysteine Rich Protein 130 197 - -
Pral5423g00018 504 MobiDBLite consensus disorder prediction 426 447 - -
Pral5423g00018 504 PANTHER PROTEIN DA1-RELATED 2 32 503 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5423g00018 Pral-Chr5423 115471 121270 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral5423g00018 DA1-like 3.7e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5423g00018 - - gmx:100784976 808.905