LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5423g00004	ATGTCGAGCCTTGATGGGGTGGTCTCTGTGTTCCCTAATCGAATGAGACAACTCCACACAACAAGGTCTTGGGACTTCATTGGCTTCCCACAGAACGTGCAGAGAGCCACGACCGAAAGTGATGTCATCATTGGAGTTCTTGACACTGGAATCTGGCCGGAATCCGAGAGCTTCAGTGACAAAGGATTGGGTCCGCCCCCAAAGAAATGGAAGGGCACATGTCTTAACTTCACTTGCAACAGAAAAATCATTGGGGCAAAGTACTACAATTACGCTGGATCATTCGAAGGTGAAGAAATGTCTCCAAGAGACTATCATGGTCATGGGACTCATGTATCATCCACAGCAGCAGGGAACCCAGTTAGCCAGGCAAGCATGTTAGGGTTAGCACCAGGAACAGCAAGAGGGGGTGCTGTATCAGCACGCATTGCTGTCTATAAAGTTTGTTGGTCGCGTCGTTGTAATGATGCAGACATTCTCGCAGCTTTTGATGATGCCATTGCTGATGGGGTCGATATATTATCAGTTTCTCTTGGAGGGTTGAATGATAAGAATTATTTCAGAAATGCAATTGCCATTGGAGCTTTTCATGCTATGAGACGTGGAATTTTAACGGTAACTTCTGCTGGAAATTCAGGTCCAAGTCCCGGATCGCTTGGTAATTTTGAACCTTGGGCTATTTCTGTGGCCGCTAGCACCATCGACAGAAAGTTGGTTACAAAGGTTGGATTAGGTGACAACAGAACATTTGAGGGAGTTTCAATAAATACATTTGACCTGAACGAACAACAGTATCCTATAATTTACGGAGGAGACGCAACAAATACGAGAGGAGGCTTTGATGGATCTGCATCAAGGTCTTGCAGTCGAGGTTCATTGGATCCAAATTTAGTTAAGGGTAAAATTGTCCTTTGTGAGGGAAGAAACAGAGCAGAAGGTGCCTTTGTGGCTGAAGCTGCTGGTGCCGTTGCACAAGGTCAGAATTCCAGAGACCATGGCTACTCTTTCCCCTTGCCCGCTTCGTACATTGACTTGGAGGACGCCAACAATATATTTGTCTACATTAATGCCACCAAGAATGCGACTGCAACCATATTTAAAACTAACGAGGAAAAGGATTCATTGGCCCCTGTGGTAGTCTCTTTCTCCGCAAGGGGTCCTAGCCCTGTTTCCCCTGATATTCTCAAGCCGGATTTAGTGGCTCCGGGAGTCGAGATTCTCGCTGGTTGGTCTCCGAAAGGCTCTATTTCTAGGATTGAAGGCGACAACAGAAGTTTGCAGTTCAACATAATCTCAGGAACATCCATGTCTTGTCCACATGTTTCTGGGGCTGCAGCTTACGTTAAATCATTCCATCCTACATGGTCCCCTTCTGCTGTTCAATCGGCTTTGATGACCACTGCTAGACCACTGAGTCCTTGGATTAACCGAGATGCAGAGTTTGCATATGGAGCAGGTCAAATCGATCCAATAAAGGCAATAAATCCTGGCTTAGTATACGATGCCAGTGAAATAGATTTTGTGAGATTCTTATGTGGACAAGGGTATAGCACAAGGACATTACAGCTTGTCACAGGGGATAATAGCAGCTGTTCTGTATCAGCTAAAGCTAGTGATCTCAACTATCCCTCCTTTGCTCTTCCAACCCCTCCCTCCAACGTCACTGTAAGTGGCATTTTTAAAAGAACTGTTACATATGTTGGGTCAGAAAAACCCACATATAAAGCCACTGTGATTAGTCCTCTGGGGCTGAAAATCCAAGTGAACCCAAGTGTTCTTTCATTCACTTCTTATGGTGAAAAGCAGAGCTTTGTGCTGAGTGTTGAGGGAAGCTTGGAAGCATCTGTAGTGTCGGCATCTTTGGTTTGGAGTGATGGCAAGATCCAAGTGAGAAGCCCTGTTGTTGTGTTCAATTCACCTCAGTAG	1926	0.4548	MSSLDGVVSVFPNRMRQLHTTRSWDFIGFPQNVQRATTESDVIIGVLDTGIWPESESFSDKGLGPPPKKWKGTCLNFTCNRKIIGAKYYNYAGSFEGEEMSPRDYHGHGTHVSSTAAGNPVSQASMLGLAPGTARGGAVSARIAVYKVCWSRRCNDADILAAFDDAIADGVDILSVSLGGLNDKNYFRNAIAIGAFHAMRRGILTVTSAGNSGPSPGSLGNFEPWAISVAASTIDRKLVTKVGLGDNRTFEGVSINTFDLNEQQYPIIYGGDATNTRGGFDGSASRSCSRGSLDPNLVKGKIVLCEGRNRAEGAFVAEAAGAVAQGQNSRDHGYSFPLPASYIDLEDANNIFVYINATKNATATIFKTNEEKDSLAPVVVSFSARGPSPVSPDILKPDLVAPGVEILAGWSPKGSISRIEGDNRSLQFNIISGTSMSCPHVSGAAAYVKSFHPTWSPSAVQSALMTTARPLSPWINRDAEFAYGAGQIDPIKAINPGLVYDASEIDFVRFLCGQGYSTRTLQLVTGDNSSCSVSAKASDLNYPSFALPTPPSNVTVSGIFKRTVTYVGSEKPTYKATVISPLGLKIQVNPSVLSFTSYGEKQSFVLSVEGSLEASVVSASLVWSDGKIQVRSPVVVFNSPQ	641

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5423g00004	641	ProSitePatterns	Serine proteases, subtilase family, histidine active site.	108	118	IPR022398	-
	Pral5423g00004	641	SUPERFAMILY	Subtilisin-like	18	498	IPR036852	GO:0004252\|GO:0006508
	Pral5423g00004	641	Gene3D	-	511	638	-	-
	Pral5423g00004	641	ProSiteProfiles	Serine proteases, subtilase domain profile.	23	494	-	-
	Pral5423g00004	641	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	3	636	IPR045051	-
	Pral5423g00004	641	Pfam	Fibronectin type-III domain	539	636	IPR041469	-
	Pral5423g00004	641	PRINTS	Subtilisin serine protease family (S8) signature	39	58	IPR015500	-
	Pral5423g00004	641	PRINTS	Subtilisin serine protease family (S8) signature	104	117	IPR015500	-
	Pral5423g00004	641	PRINTS	Subtilisin serine protease family (S8) signature	432	448	IPR015500	-
	Pral5423g00004	641	CDD	Peptidases_S8_3	17	468	IPR034197	-
	Pral5423g00004	641	Pfam	Subtilase family	40	485	IPR000209	GO:0006508\|GO:0008236
	Pral5423g00004	641	Gene3D	Peptidase S8/S53 domain	41	507	IPR036852	GO:0004252\|GO:0006508
	Pral5423g00004	641	Gene3D	-	235	372	-	-
	Pral5423g00004	641	CDD	PA_subtilisin_like	242	365	-	-
	Pral5423g00004	641	ProSitePatterns	Serine proteases, subtilase family, serine active site.	433	443	IPR023828	-
	Pral5423g00004	641	FunFam	Subtilisin-like protease SBT1.5	41	250	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5423g00004	Pral-Chr5423	37021	47582	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5423g00004	1	610	Subtilisin-like Serine Gene Family	AT5G59190	50.403	0.0	598

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5423g00004	-		-	gmx:547512	843.573