Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5422g00007 ATGGCTATTGCTGGACTACATAATCTGTCTGTGCTTGACTCTTCTTTTCTTAGGGATTCCCACTCTCAATCCCCTAGGAGGCGAGAAGATGGAGGGAGTGGAAGCACCCGATCTTCCTCAATCTTGCAAATGTGGCGAGAGATTGAGGATGAGCATGTGGTGGGTCAAGTCCAAGGAAGACCTGGCGACGGATTACTTCAGCAAAGGAGTGATGAGTTCATTACTGACCTCTCACAGGCAAGTGTGCCCGGTAGCCATGACACAGGAGAGAGGCATGTGGTAGAAGATTCAATTTTGGGTGAGACTGATTGTGAAACATGGTCACAGTCACAGGGTCAGCTTGAATCTCCTGATGAGCAGGAGGAATTAAACAATTGTAGTTGTGATAATTCTTCTGATCTTGGAGAAGTTGAAAGGGAAAGGGTGAGGCAAATTTTCAGGGAATGGATGAAAAGTGGTGCTGGGGATCAAGCCACAAACATTCCCCAAGGTCATAGCAGTTCAAGATCAGAATGGCTCGGTGAAACTGAGCAGGAGAGGGTGAGAATCATAAGGGAGTGGGTACAATTGAGTAGCCAGCAGAGAGTTATTTCTTCTGGGGACAACAGGGAAGAACAATCAGCTGAATTTGGTACCCAAATAGAGCGAGTTCGTGATGGGTTTGCTGTGAATCAGAGCGAGAGTCAAACTGAGCATATGCGAAGGGGTATCCGTAAATTATGTGGCAGACAGGTTATGCTTGATATGCTTAAGAAGGCCCAGAGGGAAAGACAAAAAGAAGTTCAGGAATTGTTGGACCATAGAGCTGTATCTCATTTCCCTCATCGCAACCGCATTCAGGCATTGCTCAGGGGTAGGTTCTTGAGAAATGACAGATCAATTGATGTTAACCGGTCCACTTCCATAGCTGAAAGTGAATTAGGCTTACTGAGACAAAAACAGACTGTATCAGGTCTAAGGGAAGGGTTTTTCTCTGGGAAGGACTATTCTGGTAGCAGTCAAGTAACTTGCACTCTTTCAGATACCTCATCTAACAATGGCATTGATAATAATTCAAATGAACAAACTGACTCGGGCAGTTTACATTCAGTCTCAATTGTACATTTTGAACAGTCTGAACCTACTGTTGGAGACAGTGATGGAGTTGGGATCTTAGATGGTCAGAATTTTACACGAGAAATCATTAAGGAAAATGTAGATTGTCAAGATTCCACTGCTCATATAGAAGGAAGGTCATCACAGCTCTTGGAAAATGAGTCAAAAGATTGCCAATCATCATCCAGTGTTGGGATGGGAAGAAGAGATGATTGTGGGCTACATGTTGTTGAAATGACAGTTGAAGATACCACCGATAGACTTATGCAACAGAATTGTCAGATTGGAGTTACAGAACATAGCAATATACAGGGATCTGATGAGGTATATCCTGAAGAATTTGAGCCAAGTGTCATGAGCAATGATGATAATGATTCATCAACTCATAGTGATGTTATGGAAGCAATAGCAGCAGACAACGAAAATAGGTCTGTATCTACTGCTCCGGAAGAACAGCAGCAGGAAGAACTTATTGAAAATGAAGGAAGTGATGGGCACCAGAGAAATGGCATAGAGGAAAGTCTGGATGATAATCATCCCAGTGGTACCTCCAATGAGTGGCCTCAAGACATTTTGGGCAATGAAGATGGTGAAAACTCTCATCTACCAGAAGCCCCAGAAATGTGGCAAGAAGATGGTGGCTTTCAGGAGGCGGTGGAAAATTGGTTGGGTGGACCTTCTGATCATGAAGCTGCTCCAGTTGGTAGAATTCATGGCTTTTACTTTCCAGATGATGACAATGTGAATAGCGTGGAACTCAGGGAACTGCTAAATAGGAGAAGTGTTTCTAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAGTCATATGTTGAAAGGCAAGGTCATGCTCATGTTGAGTGGGAGCTGCAAGAAACAACCCCTTCTTCTGCCTCAGTTGAGCAGGACCTGGAGCAGCCACGTAGGGATCAGATTGTTGGTCAGGAGGATACTATCAACAGTCCACTTGACCAGCCCTCATCACCAACACCTCCTCAACCTCTCTGGGAACGACATTCACATCATGACAATTGGTCACGAGCTGATATGAATAACCAGCGTCTAGGAATTGGGCATTCATTTCCTTTGGAGTGGGAGATTATCAATGACTTGAGAATTGACATGGTGAGGCTACAGCAAAGAATGAATAATATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCAATAAGACAGGAGGTTTCTGCAGCCCTAAATCGCTCATCTGGTTCATCAGATGTGCATGACCATGATTCACCTGATGACAAGTCTAAATGGGAATGTGTGAGAAAAGGCCTGTGCTGTATTTGCTGCGAGAGCAATATCGATTCTTTGTTGTACAGATGCGGGCACATGTGCACATGTTCAAAATGTGCCAATGAGTTGTTCCAAAGTAGGAGAAAGTGTCCAATGTGTCAAGCACCTGTTGTGGAGGTGATACGTGCTTATTCTATACTATAA 2586 0.4424 MAIAGLHNLSVLDSSFLRDSHSQSPRRREDGGSGSTRSSSILQMWREIEDEHVVGQVQGRPGDGLLQQRSDEFITDLSQASVPGSHDTGERHVVEDSILGETDCETWSQSQGQLESPDEQEELNNCSCDNSSDLGEVERERVRQIFREWMKSGAGDQATNIPQGHSSSRSEWLGETEQERVRIIREWVQLSSQQRVISSGDNREEQSAEFGTQIERVRDGFAVNQSESQTEHMRRGIRKLCGRQVMLDMLKKAQRERQKEVQELLDHRAVSHFPHRNRIQALLRGRFLRNDRSIDVNRSTSIAESELGLLRQKQTVSGLREGFFSGKDYSGSSQVTCTLSDTSSNNGIDNNSNEQTDSGSLHSVSIVHFEQSEPTVGDSDGVGILDGQNFTREIIKENVDCQDSTAHIEGRSSQLLENESKDCQSSSSVGMGRRDDCGLHVVEMTVEDTTDRLMQQNCQIGVTEHSNIQGSDEVYPEEFEPSVMSNDDNDSSTHSDVMEAIAADNENRSVSTAPEEQQQEELIENEGSDGHQRNGIEESLDDNHPSGTSNEWPQDILGNEDGENSHLPEAPEMWQEDGGFQEAVENWLGGPSDHEAAPVGRIHGFYFPDDDNVNSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWELQETTPSSASVEQDLEQPRRDQIVGQEDTINSPLDQPSSPTPPQPLWERHSHHDNWSRADMNNQRLGIGHSFPLEWEIINDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSSGSSDVHDHDSPDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANELFQSRRKCPMCQAPVVEVIRAYSIL 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5422g00007 861 Coils Coil 250 270 - -
Pral5422g00007 861 MobiDBLite consensus disorder prediction 777 798 - -
Pral5422g00007 861 MobiDBLite consensus disorder prediction 467 493 - -
Pral5422g00007 861 MobiDBLite consensus disorder prediction 411 432 - -
Pral5422g00007 861 MobiDBLite consensus disorder prediction 505 571 - -
Pral5422g00007 861 MobiDBLite consensus disorder prediction 156 171 - -
Pral5422g00007 861 MobiDBLite consensus disorder prediction 524 540 - -
Pral5422g00007 861 MobiDBLite consensus disorder prediction 151 175 - -
Pral5422g00007 861 SUPERFAMILY RING/U-box 808 854 - -
Pral5422g00007 861 MobiDBLite consensus disorder prediction 18 39 - -
Pral5422g00007 861 CDD mRING-HC-C3HC5_NEU1 809 858 - -
Pral5422g00007 861 MobiDBLite consensus disorder prediction 108 132 - -
Pral5422g00007 861 MobiDBLite consensus disorder prediction 341 360 - -
Pral5422g00007 861 ProSiteProfiles Zinc finger RING-type profile. 809 848 IPR001841 -
Pral5422g00007 861 MobiDBLite consensus disorder prediction 686 709 - -
Pral5422g00007 861 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 861 - -
Pral5422g00007 861 MobiDBLite consensus disorder prediction 411 431 - -
Pral5422g00007 861 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 785 859 IPR013083 -
Pral5422g00007 861 Coils Coil 737 764 - -
Pral5422g00007 861 MobiDBLite consensus disorder prediction 108 134 - -
Pral5422g00007 861 MobiDBLite consensus disorder prediction 541 555 - -
Pral5422g00007 861 Pfam Zinc finger, C3HC4 type (RING finger) 806 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5422g00007 Pral-Chr5422 31314 36461 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5422g00007 809 855 C3H Transcription Factor Family AT3G06140 40.426 4.14e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5422g00007 - - pcin:129315785 1455.65