Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5411g00058 ATGCTCCAACTAAACTGCATTGTGTTATTCTGCATTCTGGTGTCATTTTCGCCACTCGGCCGAGCAATGCTGAACCTCACTCTTCCTGGCCAGCATCCGGACCCAGATTCTGTCGTTCGAGAATTTCACAGGAAAGTGAATGCTTCAATAACGAGAAGGCAGATGCTAGCAGATTCGCAGATACAAGACTCATCGTGTTTAACAGGGAACCCAATTGACGATTGCTGGAAATGCGACCCAGATTGGCCCAACAACAGGCAGAGGTTAGCTGACTGCGCGATTGGGTTCGGGCAGTACGCCAAGGGAGGTCAGGGCGGCGAGTTCTATATCGTCACTGACTCCTCTGACGACGACGCCGTCAACCCCAGACCTGGTACACTCAGATACGGCGTGATTCAGACGCAGCCACTGTGGATAGTGTTCCCCAGTAATATGATGATTAAATTGTCTCAGGAGCTCATCTTCAACAGCTTCAAAACTATCGATGGCCGTGGTGCTGACGTTCACATTGTGGGCGGTGGCTGCATCACTCTCCAGTATATAAGCAATGTCATCATTCACAACGTTCACATCCACCATTGTCGCCCCTCAGGGGAGGCTAACGTGCGATCCAGCCCAGATCACTATGGGTGGCGAACAGAGTCGGACGGCGACGGGATATCGATATTCGGGTCGAAAGACATATGGATCGACCACTGCACTCTGTCTCGGTGCAAGGACGGGTTGATCGACGCCGTCATGGGTTCGACGGGCATCACCATATCCAACAACTACTTCTCTCATCACAACGAGGTGATGCTTCTCGGCCACAGCGACGACTACCAGCCCGACTCCGGGATGCAGGTCACCATCGCCTTCAACCACTTCGGCGAGCAGCTGGTCCAGAGAATGCCTCGCTGCCGGAAGGGATACATCCACGTCGTCAACAACGACTACACTCACTGGGAGATGTACGCAATCGGAGGCAGCGGTAACCCCACGATCAACAGCCAGGGGAATCGGTACACAGCGCCAACGAATCCGTTCGCGAAGGAGGTGACCAAGAGAGTGGACACGGAGGAAGGGAAGTGGAAGGGGTGGAACTGGAGATCGGAAGGGGACATAATGGTGAATGGAGCATTCTTCGTGGCTTCCGGCGAAGGGGTGGAGGTCAAGTACGAGAAGGCCTACAGTGTAGAGCCTAGGTCCGCCGATCACATTGATTTCCTCATAATGCACGCCGGCGTGCTCGGCGTTTCCAGGGATAACAATCTGGGGATGTGGAGCAGGGGGCCGAACGGAGAGGGCGATGAGATAACAGAGTCAGGACCCGAATACACTGACGATATGGCGGGGACGGCGAAGCTGACGGCGGAGGCGTATTGGGTGGGTGTGATATGGTGTTTGATAGCACTCTTGTGGGGGTGGTTATGCGAATTGTGA 1422 0.5429 MLQLNCIVLFCILVSFSPLGRAMLNLTLPGQHPDPDSVVREFHRKVNASITRRQMLADSQIQDSSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGQGGEFYIVTDSSDDDAVNPRPGTLRYGVIQTQPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNVHIHHCRPSGEANVRSSPDHYGWRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYQPDSGMQVTIAFNHFGEQLVQRMPRCRKGYIHVVNNDYTHWEMYAIGGSGNPTINSQGNRYTAPTNPFAKEVTKRVDTEEGKWKGWNWRSEGDIMVNGAFFVASGEGVEVKYEKAYSVEPRSADHIDFLIMHAGVLGVSRDNNLGMWSRGPNGEGDEITESGPEYTDDMAGTAKLTAEAYWVGVIWCLIALLWGWLCEL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5411g00058 473 Pfam Pectate lyase 154 333 IPR002022 -
Pral5411g00058 473 FunFam Pectate lyase 69 411 - -
Pral5411g00058 473 SUPERFAMILY Pectin lyase-like 64 394 IPR011050 -
Pral5411g00058 473 Gene3D - 69 411 IPR012334 -
Pral5411g00058 473 PANTHER PECTATE LYASE 18-RELATED 30 413 IPR045032 GO:0030570
Pral5411g00058 473 SMART amb_all 144 341 IPR002022 -
Pral5411g00058 473 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Pral5411g00058 473 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Pral5411g00058 473 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Pral5411g00058 473 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Pral5411g00058 473 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Pral5411g00058 473 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Pral5411g00058 473 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Pral5411g00058 473 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5411g00058 Pral-Chr5411 286007 289028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5411g00058 1 459 Polysaccharide Lyase AT3G53190 74.514 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5411g00058 K01728 - gmx:100775595 778.089