Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5411g00049 ATGCCGGATCCTTACGACTTCTCCCTGTACGACGACGCCGAGGTTGTAGCGGCACAAATATCAGAAGGCGAAGAGGATTCTGCAGCCAGCGAAGAAGAAGACGAGGATGATGAGGAGTACGAGGACGAGGCCGAAGAGTACATTCCGCTCGTACAGTCTCGTAGGGCGTTACAGGGCGTTCCTTCTACGTCCGATCAACATGATACCATAATTCAGGAGGTTCCGGATGATCTTGTTGAAGAAGAAGGAAACAAACGGCGGAGGACTGAGGGAGGAGAAACGTGTTTGTCTCTGGGAATTGTGAACGCCGAAAGTAGTCAAGGGAATGAATGGAATTATGCTGACACCGATGGCTTGTATTGCCCCATTTGCCTGGATGCTTGGACCAATGACGGTGAACACCATATCTGCTCTCTTCCGTGCGGGCACATATATGGTATGTCTTGCATCAAAAGGTGGCTTCAACAGAGAAAAAATTCCGGGAAGTGTCCTCAATGCAACAGGAAATGTGCGTTAAGGGATGTAAGGAAACTCTATGCTTCACGTGTACTTGCTGCTGATGAAGCGTTACAGAAGAAAATTCGGTCGCTTGAGGCCAGATGTGCTATTCTCGAATGCAAGGGCTCTGACTGGTGCAAGAAAGAAGCATCATGGCAGAAAAAAGAAGCTCAATTGCATCTTGAAGTTGAGAAACTTACGGAGAGAAATACATATTTGGAGCAGCTAATACAAGACATGGAAAGGAGGCAAACTGGTGGTACCATGGGGGCAATTGGGAATTGTCGATGGAGATCTGAATCAAAATATGGCTTTGGGGCAAAGATGTATGGGAAAGGACGTTGTTGCAGTTTTGAATTGCAGAAGGAGTTTCAGCTGGGCAGCGCTCTTGTGTTTGACATAAATGCTTCTAATCAAATATTATTAATAGCACAAAGGCCAAAAGGGATAGGTGGGCCTTACTTGCTAACTAAAATGAGTTTGATACCTCCATATGAGATGGAAGATATCTTCCTGCCTCCTGCTTCGTGTGCGATTAAGGATCTCCATATTTCCCCTTTGAATAGTGACCTGGCCCTTTATGCTTCTTTGGGAAGGAAATTATCAGTACTCAGCATGCAGAGCAACAATGTGGCTGTCAATTATGATCTACAGGTTCCTGCTTGGTCATGTTCATGGGATCTCAGCAGTTCCCATTATGCATACGCTGGACTACAGAATGGTTCTGTCTTGGTATTTGATTTGCGCCAAACTTCTGGGCCCTTAAAATCCCTAAATGGGTTAACTAGCAATCCCGTTCATACTGTACAGTCTCTTGTACAAGATCCCAGTCTTTCTTCCGGTTTTGGAGCAATTCTATCTGCTTCTGCCATTGGGCTGTGTCAGTGGAACATAGGTGCTGAAGAGGGGCCATCTATGATTCCTGAAACTGGTAATCAAGGGGTTTGTATATCTCTTGCCTATTGCCCAAGCAGTGATGATATTGTCATATCATACCGTCCCAAATTTGACATGTCCATTGATGGGTCTCTCTCCCAGCCATCTCTCACTCCTTCCCAAGTTATAGGACAAGGAGTCCAGGGTTCTCATGTTTTGTTGAAGAGGCTTGACGGAAGCCATTTGCAACAGCTGGGTTCCTCATGTGCCAATGTAAGTAACATTCGACTTCCAAAATGTGTAATAATGGACGTAGAGAGTGAGAGCCGATTGTTAGCATCTGAAGATGAAGTTGCATGTGAATTGGTCTTGCAAGAGTTGCCATCTTTTGGGTTTGTTCAGCGATTGAAATTACCAGAGCATGCGCGGGATCTGAAGTATTCACCTACTCTGAATCATGGATTACTGGGTTGTTTAACTGGAAAGTCGTTGCAACTTTTCTGTACAAAACTCTCGTGA 1893 0.4522 MPDPYDFSLYDDAEVVAAQISEGEEDSAASEEEDEDDEEYEDEAEEYIPLVQSRRALQGVPSTSDQHDTIIQEVPDDLVEEEGNKRRRTEGGETCLSLGIVNAESSQGNEWNYADTDGLYCPICLDAWTNDGEHHICSLPCGHIYGMSCIKRWLQQRKNSGKCPQCNRKCALRDVRKLYASRVLAADEALQKKIRSLEARCAILECKGSDWCKKEASWQKKEAQLHLEVEKLTERNTYLEQLIQDMERRQTGGTMGAIGNCRWRSESKYGFGAKMYGKGRCCSFELQKEFQLGSALVFDINASNQILLIAQRPKGIGGPYLLTKMSLIPPYEMEDIFLPPASCAIKDLHISPLNSDLALYASLGRKLSVLSMQSNNVAVNYDLQVPAWSCSWDLSSSHYAYAGLQNGSVLVFDLRQTSGPLKSLNGLTSNPVHTVQSLVQDPSLSSGFGAILSASAIGLCQWNIGAEEGPSMIPETGNQGVCISLAYCPSSDDIVISYRPKFDMSIDGSLSQPSLTPSQVIGQGVQGSHVLLKRLDGSHLQQLGSSCANVSNIRLPKCVIMDVESESRLLASEDEVACELVLQELPSFGFVQRLKLPEHARDLKYSPTLNHGLLGCLTGKSLQLFCTKLS 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5411g00049 630 MobiDBLite consensus disorder prediction 25 44 - -
Pral5411g00049 630 CDD mRING-C3HGC3_RFWD3 117 179 - -
Pral5411g00049 630 MobiDBLite consensus disorder prediction 21 44 - -
Pral5411g00049 630 SUPERFAMILY RING/U-box 111 171 - -
Pral5411g00049 630 Coils Coil 187 207 - -
Pral5411g00049 630 Pfam Ring finger domain 120 167 IPR001841 -
Pral5411g00049 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 234 IPR013083 -
Pral5411g00049 630 SMART ring_2 121 166 IPR001841 -
Pral5411g00049 630 ProSiteProfiles Zinc finger RING-type profile. 121 167 IPR001841 -
Pral5411g00049 630 PANTHER RFWD3 PROTEIN 20 628 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Pral5411g00049 630 SUPERFAMILY WD40 repeat-like 340 497 IPR036322 GO:0005515
Pral5411g00049 630 Coils Coil 229 249 - -
Pral5411g00049 630 Gene3D - 334 508 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5411g00049 Pral-Chr5411 239458 244575 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5411g00049 120 172 C3H Transcription Factor Family AT1G51930 42.593 1.10e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5411g00049 K15691 - qsa:O6P43_006620 756.903