Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5411g00048 ATGCCGGATCCTTACGACTTCTCCCTGTACGACGACGCCGAGGTTGTAGCGGCACAAATATCAGAAGGCGAAGAGGATTCTGCAGCCAGCGAAGAAGAAGACGAGGATGATGAGGAGTACGAGGACGAGGCCGAAGAGTACATTCCGCTCGTACAGTCTCGTAGGGCGTTACAGGGCGTTCCTTCTACGTCCGATCAACATGATACCATAATTCAGGAGGTTCCGGATGATCTTGTTGAAGAAGAAGGAAACAAACGGCGGAGGACTGAGGGAGGAGAAACGTGTTTGTCTCTGGGAATTGTGAACGCCGAAAGTAGTCAAGGGAATGAATGGAATTATGCTGACACCGATGGCTTGTATTGCCCCATTTGCCTGGATGCTTGGACCAATGACGGTGAACACCATATCTGCTCTCTTCCGTGCGGGCACATATATGGTATGTCTTGCATCAAAAGGTGGCTTCAACAGAGAAAAAATTCCGGGAAGTGTCCTCAATGCAACAGGAAATGTGCGTTAAGGGATGTAAGGAAACTCTATGCTTCACGTGTACTTGCTGCTGATGAAGCGTTACAGAAGAAAATTCGGTCGCTTGAGGCCAGATGTGCTATTCTCGAATGCAAGGGCTCTGACTGGTGCAAGAAAGAAGCATCATGGCAGAAAAAAGAAGCTCAATTGCATCTTGAAGTTGAGAAACTTACGGAGCTAATACAAGACATGGAAAGGAGGCAAACTGGTGGTACCATGGGGGCAATTGGGAATTGTCGATGGAGATCTGAATCAAAATATGGCTTTGGGGCAAAGATGTATGGGAAAGGACGTTGTTGCAGTTTTGAATTGCAGAAGGAGTTTCAGCTGGGCAGCGCTCTTGTGTTTGACATAAATGCTTCTAATCAAATATTATTAATAGCACAAAGGCCAAAAGGGATAGGTGGGCCTTACTTGCTAACTAAAATGAGTTTGATACCTCCATATGAGATGGAAGATATCTTCCTGCCTCCTGCTTCGTGTGCGATTAAGGATCTCCATATTTCCCCTTTGAATAGTGACCTGGCCCTTTATGCTTCTTTGGGAAGGAAATTATCAGTACTCAGCATGCAGAGCAACAATGTGGCTGTCAATTATGATCTACAGGTTCCTGCTTGGTCATGTTCATGGGATCTCAGCAGTTCCCATTATGCATACGCTGGACTACAGAATGGTTCTGTCTTGGTATTTGATTTGCGCCAAACTTCTGGGCCCTTAAAATCCCTAAATGGGTTAACTAGCAATCCCGTTCATACTGTACAGTCTCTTGTACAAGATCCCAGTCTTTCTTCCGGTTTTGGAGCAATTCTATCTGCTTCTGCCATTGGGCTGTGTCAGTGGAACATAGGTGCTGAAGAGGGGCCATCTATGATTCCTGAAACTGGTAATCAAGGGGTTTGTATATCTCTTGCCTATTGCCCAAGCAGTGATGATATTGTCATATCATACCGTCCCAAATTTGACATGTCCATTGATGGGTCTCTCTCCCAGCCATCTCTCACTCCTTCCCAAGTTATAGGACAAGGAGTCCAGGGTTCTCATGTTTTGTTGAAGAGGCTTGACGGAAGCCATTTGCAACAGCTGGGTTCCTCATGTGCCAATGTAAGTAACATTCGACTTCCAAAATGTGTAATAATGGACGTAGAGAGTGAGAGCCGATTGTTAGCATCTGAAGATGAAGTTGCATGTGAATTGGTCTTGCAAGAGTTGCCATCTTTTGGGTTTGTTCAGCGATTGAAATTACCAGAGCATGCGCGGGATCTGAAGTATTCACCTACTCTGAATCATGGATTACTGGGTTGTTTAACTGGAAAGTCGTTGCAACTTTTCTGTACAAAACTCTCGTGA 1872 0.4535 MPDPYDFSLYDDAEVVAAQISEGEEDSAASEEEDEDDEEYEDEAEEYIPLVQSRRALQGVPSTSDQHDTIIQEVPDDLVEEEGNKRRRTEGGETCLSLGIVNAESSQGNEWNYADTDGLYCPICLDAWTNDGEHHICSLPCGHIYGMSCIKRWLQQRKNSGKCPQCNRKCALRDVRKLYASRVLAADEALQKKIRSLEARCAILECKGSDWCKKEASWQKKEAQLHLEVEKLTELIQDMERRQTGGTMGAIGNCRWRSESKYGFGAKMYGKGRCCSFELQKEFQLGSALVFDINASNQILLIAQRPKGIGGPYLLTKMSLIPPYEMEDIFLPPASCAIKDLHISPLNSDLALYASLGRKLSVLSMQSNNVAVNYDLQVPAWSCSWDLSSSHYAYAGLQNGSVLVFDLRQTSGPLKSLNGLTSNPVHTVQSLVQDPSLSSGFGAILSASAIGLCQWNIGAEEGPSMIPETGNQGVCISLAYCPSSDDIVISYRPKFDMSIDGSLSQPSLTPSQVIGQGVQGSHVLLKRLDGSHLQQLGSSCANVSNIRLPKCVIMDVESESRLLASEDEVACELVLQELPSFGFVQRLKLPEHARDLKYSPTLNHGLLGCLTGKSLQLFCTKLS 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5411g00048 623 MobiDBLite consensus disorder prediction 25 44 - -
Pral5411g00048 623 Coils Coil 222 242 - -
Pral5411g00048 623 CDD mRING-C3HGC3_RFWD3 117 179 - -
Pral5411g00048 623 MobiDBLite consensus disorder prediction 21 44 - -
Pral5411g00048 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 231 IPR013083 -
Pral5411g00048 623 Gene3D - 327 501 IPR015943 GO:0005515
Pral5411g00048 623 PANTHER RFWD3 PROTEIN 20 621 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Pral5411g00048 623 Coils Coil 187 207 - -
Pral5411g00048 623 SMART ring_2 121 166 IPR001841 -
Pral5411g00048 623 ProSiteProfiles Zinc finger RING-type profile. 121 167 IPR001841 -
Pral5411g00048 623 Pfam Ring finger domain 120 167 IPR001841 -
Pral5411g00048 623 SUPERFAMILY WD40 repeat-like 333 490 IPR036322 GO:0005515
Pral5411g00048 623 SUPERFAMILY RING/U-box 111 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5411g00048 Pral-Chr5411 239458 244575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5411g00048 120 172 C3H Transcription Factor Family AT1G51930 42.593 1.09e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5411g00048 K15691 - qsa:O6P43_006620 739.954