Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5411g00042 ATGGGTAGAGCTCCTTGCTGTGACAAGGCCAATGTAAAGAAGGGACCATGGTCTCCTGAAGAAGATGCACAGCTAAAGGAGTACATAGAGAAACATGGAACTGGAGGCAACTGGATTGCTCTCCCACAAAAAGCTGGTCTCAAAAGATGTGGTAAAAGCTGTAGACTAAGATGGCTCAACTATCTCCGTCCCAACATCAAACACGGCGAGTTCTCCGATCATGAAGACAGGATCATCTGCAGCCTCTTTGCCAGCATCGGAAGCAGGTGGTCAGTAATAGCATCTCAGTTGCCTGGAAGGACTGATAACGATATTAAGAACTACTGGAACACCAAGCTTAAGAAGAAGTTGATGTGCATGAACCCTTCCGATCATCATCACCAAGCTACCCTTTTACCAGTTCTCCCGAATTCAACTCCATCTTCATCCTCATCATCGGCATCTTCACCATTATCATTCACAGACACCACCAACTCTTACTGCCACGCCCCTTATGCTTCTTCATTCTCAGGAGTTGATCAGTCCATTTACTTCTCGTCGGCAAGTTTTTTGAACGGCCATTCCTCTTGTGCTTCTGCAGCTGGCTCTTTTTATCAACCCCAAGAAAGCTTGATGAGTCCCATTGAGCTAGTCGCAGCTAGTTGTAGCCCTTCGCACGGAAGCTATAATAATAGCAGCCAGCTGAGTCATGTGATGAAAGAAGCTGAAGCTGCTGGATATGGAGTAGATCAAGAAACTATGGTCCAACAGATGATAGCTGCCAATAGTAACTATGATGATCTGCACAATATTGGGATGGAAATGGAAGAAACCCAGAAGGTGATGGCGTGTGATGGGGACTACGTGAATGGTTGGACGGGAAAACAAAATGGACTTTGGGAAGAGAATCCGCCATTAGATTACGGAATAGAAGAAATTAAGCAGTTAATAAGTTCTAGCAGCTGCAACAACTTCCTGTTCGATGAAAACATGACGCAGAAAAGGGCCTTGTACTACTACTACTACTGA 1008 0.4514 MGRAPCCDKANVKKGPWSPEEDAQLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDHEDRIICSLFASIGSRWSVIASQLPGRTDNDIKNYWNTKLKKKLMCMNPSDHHHQATLLPVLPNSTPSSSSSSASSPLSFTDTTNSYCHAPYASSFSGVDQSIYFSSASFLNGHSSCASAAGSFYQPQESLMSPIELVAASCSPSHGSYNNSSQLSHVMKEAEAAGYGVDQETMVQQMIAANSNYDDLHNIGMEMEETQKVMACDGDYVNGWTGKQNGLWEENPPLDYGIEEIKQLISSSSCNNFLFDENMTQKRALYYYYY 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5411g00042 335 Gene3D - 7 68 - -
Pral5411g00042 335 FunFam Transcription factor RAX3 7 68 - -
Pral5411g00042 335 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pral5411g00042 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Pral5411g00042 335 FunFam Transcription factor RAX2 70 133 - -
Pral5411g00042 335 Gene3D - 69 131 - -
Pral5411g00042 335 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pral5411g00042 335 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pral5411g00042 335 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pral5411g00042 335 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pral5411g00042 335 CDD SANT 16 62 IPR001005 -
Pral5411g00042 335 SMART sant 67 115 IPR001005 -
Pral5411g00042 335 SMART sant 13 64 IPR001005 -
Pral5411g00042 335 PANTHER OS09G0431300 PROTEIN 1 269 - -
Pral5411g00042 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5411g00042 Pral-Chr5411 213941 215664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5411g00042 1 129 MYB Transcription Factor Family AT2G36890 82.308 1.03e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5411g00042 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5411g00042 K09422 - pop:112324492 357.451