Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral5411g00041 | ATGATAGCTGTGATCGGAGGCATTCACACAGCCACGTTGGCCAAGCTCTCCGGCAAAAGCCAGGAAGCTCTCTCTCAAGCCGGCAACATTGTGGAACAGACGGTAGCGCAAATTCGAGTGGTGCTGGCATACGTGGGGGAGAGCCGGGCATTGCAAGCCTATTCGTCGGCGTTGAAAATAGTCCAGAAGGTTGGCTACAAAACTGGCCTTGCTAAGGGAATGGGATTGGGTGCCACTTACTTTGTCGTCTTTTGTTGTTACGCTCTTCTGTTATGGTACGGAGGCTACCTCGTCAGGCACCACCACACCAATGGCGGACTTGCCATCGCCACCATGTTTGCTGTTATGATAGGTGGAATCGGTTTGGGTCAATCTGCTCCAAGCATGGCTGCATTTACAAAGGCCAGAGTTGCTGCTGCAAAAATTTTCCGCGTAATTGATCACAAGCCAGGGATAGACCGAAACAGTGAATCGGGCTTGGAATTAGAGTCAGTTACGGGACTAGTGGAGCTAAAAACTGTAGACTTCTCATACCCGTCAAGGCCAGAGGTTCGGATTCTCAATGATTTCTCACTAGTTGTGCCTGCCGGGAAGACCATAGCCTTGGTTGGTAGCAGTGGCTCCGGCAAGAGCACCGTCGTCTCCCTCATTGAGAGATTCTATGACCCCACTTCTGGACAAGTTCTGCTTGATGGGCATGACATTAAAGCATTAAAGCTTAGATGGTTGAGGCAGCAAATAGGACTAGTAAGCCAAGAGCCTGCATTATTTGCCACCACAATAAGAGAAAATATACTGTTGGGTCGGCCAGATGCAGACCAGGTCGAGATTGAAGAAGCTGCAAGGGTCGCTAATGCTCATTCGTTCATTATCAAGCTTCCCGAAGGCTATGATACCCAGGTGGGGGAGAGAGGATTGCAGCTTTCCGGAGGACAAAAGCAAAGGATAGCAATTGCAAGGGCAATGTTGAAAAACCCAGCTATTCTTCTGTTGGATGAAGCAACAAGTGCATTAGACTCTGAGTCAGAAAAGCTGGTTCAAGAAGCCCTAGACCGGTTCATGATTGGGAGAACAACTCTTGTTATTGCTCATCGCCTATCCACCATTCGCAAAGCTGACCTTGTAGCTGTACTTCAACAAGGAAGTGTTACTGAAATTGGAACTCATGATGAGCTCCTTGCTAAAGGTGAAAATGGAATGTATGCCAAGCTTATTCGGATGCAGGAAGCAGCACATGAAACTGCTATGAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCTAGAAACTCTGTGAGCTCACCAATAATTGCTCGGAATTCTTCTTATGGTCGGTCCCCATACTCACGCAGGCTGTCGGACTTCTCTACTTCTGACTTTAGCCTTTCCATTGACGCACCACATCCAAATTACAGGCTCGAAAAGCTTGCCTTCAAAGACCAAGCTAGTTCCTTTTGGCGCCTTGCAAAATTGAACTCCCCTGAATGGCTGTATGCTTTAATTGGTTCCATAGGCTCTGTTGTTTGCGGATCCCTTAGTGCCTTCTTTGCTTATGTCCTTAGTGCAGTCCTTAGCGTCTATTACAATCCAAACCACAAATTTATGATTCGAGAGATTGAGAAGTATTGCTACTTGCTGATTGGCCTTTCATCAGCTGCACTTCTCTTTAATACACTCCAACATTTCTTCTGGGATATTGTGGGAGAAAATCTTACAAAGCGAGTGAGGGAGAAGATGCTGACTGCTGTGCTTAAGAACGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCTAGGATTGCAGCAAGGCTTGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGCATTTCAGTAATTGTTCAAAACACGGCCCTTATGCTAGTTGCATGTACTGCAGGGTTTGTTTTGCAGTGGCGCCTTGCCCTTGTCCTTGTAGCCGTCTTCCCTGTTGTTGTGGCAGCCACAGTTTTACAGAAAATGTTCATGAGCGGTTTCTCTGGAGACCTGGAAGAAGCTCATGCCAAGGCCACACAACTAGCAGGAGAAGCCATTGCAAATGTTAGAACTGTTGCTGCGTTTAACTCTGAAACAAAAATTGTTGGTCTTTTTACTTCTAACCTTGAAACTCCACTACGAAGATGCTTTTGGAAGGGGCAGATTTCTGGAAGTGGGTTTGGGATAGCTCAGTTTGCACTTTATGCTTCCTATGCGCTTGGTTTGTGGTATGCTTCTTGGCTCGTGAAGCACGGAATCTCTGACTTCTCTAAAACAATCAGAGTTTTTATGGTCCTCATGGTTTCTGCCAATGGCGCTGCTGAAACTCTAACCCTGGCCCCTGACTTCATCAAGGGAGGTCGAGCTATGAAGTCAGTTTTTGATCTCCTCGACCGAAGAACCGAAATTGAACCAGATGACCCAGATGCTATTCCTGTTCCAGACCGTCTTCGTGGTGAAGTTGAGCTTAAGCATGTTGACTTCTCATATCCCACTCGCCCTGATATGCCAGTATTTCGCGACCTAAATCTCCGTGCTAGAGCCGGGAAAATTCTAGCCCTTGTTGGACCTAGTGGCTGTGGTAAGAGCTCAGTCATTGCATTAGTACAACGATTTTATGATCCAACATCTGGGCGAGTGATGATTGATGGAAAGGACATCAGAAAATACAATCTCAAGTCTCTGAGGAGGCACATCGCGGTGGTACCGCAAGAGCCTTGTCTGTTTGCTGCTACTATATATGAAAACATCGCATATGGGCATGAGTCAGCCACAGAATCCGAGATAATAGAAGCAGCAACAATGGCCAATGCCCATAAATTCATATCAGCTTTGCCTGATGGATACAAGACATTTGTGGGAGAAAGAGGAGTTCAACTATCAGGAGGGCAGAAACAGAGAATAGCGATTGCTAGGGCATTTCTGAGAAAGGCCGAGTTGATGCTTCTTGATGAGGCAACAAGTGCGCTTGATGCTGAGTCTGAGAGGTCTGTTCAGGAGGCTCTGGACCGTGCGTGTTCTGGAAAAACAACAATTATAGTTGCACATAGGCTATCGACTATTAGGAATGCTAGTCTTATTGCAGTGATTGACGATGGGAAAGTGGCAGAGCAAGGATCTCACTCACATTTGTTGAAAAATCACGCGGATGGCATCTATGCACGAATGATTCAATTACAACGGTTTACACACGGTCAAGTGGTCGAGATGACATCGGGTTCGAGTTCTTCCGCGAGACCAAAAGATGATGAAAGAGAAAGCTAG | 3273 | 0.4653 | MIAVIGGIHTATLAKLSGKSQEALSQAGNIVEQTVAQIRVVLAYVGESRALQAYSSALKIVQKVGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHHTNGGLAIATMFAVMIGGIGLGQSAPSMAAFTKARVAAAKIFRVIDHKPGIDRNSESGLELESVTGLVELKTVDFSYPSRPEVRILNDFSLVVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKALKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVTEIGTHDELLAKGENGMYAKLIRMQEAAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSIDAPHPNYRLEKLAFKDQASSFWRLAKLNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPNHKFMIREIEKYCYLLIGLSSAALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMSGFSGDLEEAHAKATQLAGEAIANVRTVAAFNSETKIVGLFTSNLETPLRRCFWKGQISGSGFGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMKSVFDLLDRRTEIEPDDPDAIPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLNLRARAGKILALVGPSGCGKSSVIALVQRFYDPTSGRVMIDGKDIRKYNLKSLRRHIAVVPQEPCLFAATIYENIAYGHESATESEIIEAATMANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAIARAFLRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIIVAHRLSTIRNASLIAVIDDGKVAEQGSHSHLLKNHADGIYARMIQLQRFTHGQVVEMTSGSSSSARPKDDERES | 1090 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral5411g00041 | 1090 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 816 | 1063 | IPR027417 | - | |
Pral5411g00041 | 1090 | ProSitePatterns | ABC transporters family signature. | 308 | 322 | IPR017871 | GO:0005524|GO:0016887 | |
Pral5411g00041 | 1090 | ProSitePatterns | ABC transporters family signature. | 963 | 977 | IPR017871 | GO:0005524|GO:0016887 | |
Pral5411g00041 | 1090 | FunFam | ABC transporter B family member 19 | 790 | 812 | - | - | |
Pral5411g00041 | 1090 | FunFam | ABC transporter B family member 1 | 815 | 1064 | - | - | |
Pral5411g00041 | 1090 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 1 | 134 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Pral5411g00041 | 1090 | Pfam | ABC transporter | 187 | 336 | IPR003439 | GO:0005524 | |
Pral5411g00041 | 1090 | CDD | ABC_MTABC3_MDL1_MDL2 | 169 | 408 | - | - | |
Pral5411g00041 | 1090 | SUPERFAMILY | ABC transporter transmembrane region | 2 | 153 | IPR036640 | GO:0005524|GO:0016020 | |
Pral5411g00041 | 1090 | FunFam | ABC transporter B family member 1 | 159 | 409 | - | - | |
Pral5411g00041 | 1090 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 160 | 408 | IPR027417 | - | |
Pral5411g00041 | 1090 | SMART | AAA_5 | 851 | 1043 | IPR003593 | GO:0016887 | |
Pral5411g00041 | 1090 | SMART | AAA_5 | 196 | 382 | IPR003593 | GO:0016887 | |
Pral5411g00041 | 1090 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 490 | 806 | - | - | |
Pral5411g00041 | 1090 | SUPERFAMILY | ABC transporter transmembrane region | 488 | 811 | IPR036640 | GO:0005524|GO:0016020 | |
Pral5411g00041 | 1090 | Pfam | ABC transporter | 843 | 991 | IPR003439 | GO:0005524 | |
Pral5411g00041 | 1090 | Gene3D | - | 822 | 1069 | IPR027417 | - | |
Pral5411g00041 | 1090 | Gene3D | ABC transporter type 1, transmembrane domain | 2 | 421 | IPR036640 | GO:0005524|GO:0016020 | |
Pral5411g00041 | 1090 | Gene3D | ABC transporter type 1, transmembrane domain | 464 | 671 | IPR036640 | GO:0005524|GO:0016020 | |
Pral5411g00041 | 1090 | Gene3D | ABC transporter type 1, transmembrane domain | 722 | 821 | IPR036640 | GO:0005524|GO:0016020 | |
Pral5411g00041 | 1090 | Gene3D | - | 159 | 409 | IPR027417 | - | |
Pral5411g00041 | 1090 | FunFam | ABC transporter B family member 1 | 480 | 789 | - | - | |
Pral5411g00041 | 1090 | Pfam | ABC transporter transmembrane region | 502 | 771 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Pral5411g00041 | 1090 | Pfam | ABC transporter transmembrane region | 3 | 118 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Pral5411g00041 | 1090 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 171 | 405 | IPR003439 | GO:0005524 | |
Pral5411g00041 | 1090 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 824 | 1060 | IPR003439 | GO:0005524 | |
Pral5411g00041 | 1090 | CDD | ABC_MTABC3_MDL1_MDL2 | 824 | 1063 | - | - | |
Pral5411g00041 | 1090 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 501 | 788 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Pral5411g00041 | 1090 | PANTHER | ABC TRANSPORTER B FAMILY | 2 | 513 | IPR039421 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral5411g00041 | Pral-Chr5411 | 196577 | 201761 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral5411g00041 | 1 | 1087 | Calmodulin-binding Proteins | AT2G36910 | 88.603 | 0.0 | 1965 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral5411g00041 | K05658 | - | gmx:100814667 | 1934.84 |