Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5411g00041 ATGATAGCTGTGATCGGAGGCATTCACACAGCCACGTTGGCCAAGCTCTCCGGCAAAAGCCAGGAAGCTCTCTCTCAAGCCGGCAACATTGTGGAACAGACGGTAGCGCAAATTCGAGTGGTGCTGGCATACGTGGGGGAGAGCCGGGCATTGCAAGCCTATTCGTCGGCGTTGAAAATAGTCCAGAAGGTTGGCTACAAAACTGGCCTTGCTAAGGGAATGGGATTGGGTGCCACTTACTTTGTCGTCTTTTGTTGTTACGCTCTTCTGTTATGGTACGGAGGCTACCTCGTCAGGCACCACCACACCAATGGCGGACTTGCCATCGCCACCATGTTTGCTGTTATGATAGGTGGAATCGGTTTGGGTCAATCTGCTCCAAGCATGGCTGCATTTACAAAGGCCAGAGTTGCTGCTGCAAAAATTTTCCGCGTAATTGATCACAAGCCAGGGATAGACCGAAACAGTGAATCGGGCTTGGAATTAGAGTCAGTTACGGGACTAGTGGAGCTAAAAACTGTAGACTTCTCATACCCGTCAAGGCCAGAGGTTCGGATTCTCAATGATTTCTCACTAGTTGTGCCTGCCGGGAAGACCATAGCCTTGGTTGGTAGCAGTGGCTCCGGCAAGAGCACCGTCGTCTCCCTCATTGAGAGATTCTATGACCCCACTTCTGGACAAGTTCTGCTTGATGGGCATGACATTAAAGCATTAAAGCTTAGATGGTTGAGGCAGCAAATAGGACTAGTAAGCCAAGAGCCTGCATTATTTGCCACCACAATAAGAGAAAATATACTGTTGGGTCGGCCAGATGCAGACCAGGTCGAGATTGAAGAAGCTGCAAGGGTCGCTAATGCTCATTCGTTCATTATCAAGCTTCCCGAAGGCTATGATACCCAGGTGGGGGAGAGAGGATTGCAGCTTTCCGGAGGACAAAAGCAAAGGATAGCAATTGCAAGGGCAATGTTGAAAAACCCAGCTATTCTTCTGTTGGATGAAGCAACAAGTGCATTAGACTCTGAGTCAGAAAAGCTGGTTCAAGAAGCCCTAGACCGGTTCATGATTGGGAGAACAACTCTTGTTATTGCTCATCGCCTATCCACCATTCGCAAAGCTGACCTTGTAGCTGTACTTCAACAAGGAAGTGTTACTGAAATTGGAACTCATGATGAGCTCCTTGCTAAAGGTGAAAATGGAATGTATGCCAAGCTTATTCGGATGCAGGAAGCAGCACATGAAACTGCTATGAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCTAGAAACTCTGTGAGCTCACCAATAATTGCTCGGAATTCTTCTTATGGTCGGTCCCCATACTCACGCAGGCTGTCGGACTTCTCTACTTCTGACTTTAGCCTTTCCATTGACGCACCACATCCAAATTACAGGCTCGAAAAGCTTGCCTTCAAAGACCAAGCTAGTTCCTTTTGGCGCCTTGCAAAATTGAACTCCCCTGAATGGCTGTATGCTTTAATTGGTTCCATAGGCTCTGTTGTTTGCGGATCCCTTAGTGCCTTCTTTGCTTATGTCCTTAGTGCAGTCCTTAGCGTCTATTACAATCCAAACCACAAATTTATGATTCGAGAGATTGAGAAGTATTGCTACTTGCTGATTGGCCTTTCATCAGCTGCACTTCTCTTTAATACACTCCAACATTTCTTCTGGGATATTGTGGGAGAAAATCTTACAAAGCGAGTGAGGGAGAAGATGCTGACTGCTGTGCTTAAGAACGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCTAGGATTGCAGCAAGGCTTGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGCATTTCAGTAATTGTTCAAAACACGGCCCTTATGCTAGTTGCATGTACTGCAGGGTTTGTTTTGCAGTGGCGCCTTGCCCTTGTCCTTGTAGCCGTCTTCCCTGTTGTTGTGGCAGCCACAGTTTTACAGAAAATGTTCATGAGCGGTTTCTCTGGAGACCTGGAAGAAGCTCATGCCAAGGCCACACAACTAGCAGGAGAAGCCATTGCAAATGTTAGAACTGTTGCTGCGTTTAACTCTGAAACAAAAATTGTTGGTCTTTTTACTTCTAACCTTGAAACTCCACTACGAAGATGCTTTTGGAAGGGGCAGATTTCTGGAAGTGGGTTTGGGATAGCTCAGTTTGCACTTTATGCTTCCTATGCGCTTGGTTTGTGGTATGCTTCTTGGCTCGTGAAGCACGGAATCTCTGACTTCTCTAAAACAATCAGAGTTTTTATGGTCCTCATGGTTTCTGCCAATGGCGCTGCTGAAACTCTAACCCTGGCCCCTGACTTCATCAAGGGAGGTCGAGCTATGAAGTCAGTTTTTGATCTCCTCGACCGAAGAACCGAAATTGAACCAGATGACCCAGATGCTATTCCTGTTCCAGACCGTCTTCGTGGTGAAGTTGAGCTTAAGCATGTTGACTTCTCATATCCCACTCGCCCTGATATGCCAGTATTTCGCGACCTAAATCTCCGTGCTAGAGCCGGGAAAATTCTAGCCCTTGTTGGACCTAGTGGCTGTGGTAAGAGCTCAGTCATTGCATTAGTACAACGATTTTATGATCCAACATCTGGGCGAGTGATGATTGATGGAAAGGACATCAGAAAATACAATCTCAAGTCTCTGAGGAGGCACATCGCGGTGGTACCGCAAGAGCCTTGTCTGTTTGCTGCTACTATATATGAAAACATCGCATATGGGCATGAGTCAGCCACAGAATCCGAGATAATAGAAGCAGCAACAATGGCCAATGCCCATAAATTCATATCAGCTTTGCCTGATGGATACAAGACATTTGTGGGAGAAAGAGGAGTTCAACTATCAGGAGGGCAGAAACAGAGAATAGCGATTGCTAGGGCATTTCTGAGAAAGGCCGAGTTGATGCTTCTTGATGAGGCAACAAGTGCGCTTGATGCTGAGTCTGAGAGGTCTGTTCAGGAGGCTCTGGACCGTGCGTGTTCTGGAAAAACAACAATTATAGTTGCACATAGGCTATCGACTATTAGGAATGCTAGTCTTATTGCAGTGATTGACGATGGGAAAGTGGCAGAGCAAGGATCTCACTCACATTTGTTGAAAAATCACGCGGATGGCATCTATGCACGAATGATTCAATTACAACGGTTTACACACGGTCAAGTGGTCGAGATGACATCGGGTTCGAGTTCTTCCGCGAGACCAAAAGATGATGAAAGAGAAAGCTAG 3273 0.4653 MIAVIGGIHTATLAKLSGKSQEALSQAGNIVEQTVAQIRVVLAYVGESRALQAYSSALKIVQKVGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHHTNGGLAIATMFAVMIGGIGLGQSAPSMAAFTKARVAAAKIFRVIDHKPGIDRNSESGLELESVTGLVELKTVDFSYPSRPEVRILNDFSLVVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKALKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVTEIGTHDELLAKGENGMYAKLIRMQEAAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSIDAPHPNYRLEKLAFKDQASSFWRLAKLNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPNHKFMIREIEKYCYLLIGLSSAALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMSGFSGDLEEAHAKATQLAGEAIANVRTVAAFNSETKIVGLFTSNLETPLRRCFWKGQISGSGFGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMKSVFDLLDRRTEIEPDDPDAIPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLNLRARAGKILALVGPSGCGKSSVIALVQRFYDPTSGRVMIDGKDIRKYNLKSLRRHIAVVPQEPCLFAATIYENIAYGHESATESEIIEAATMANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAIARAFLRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIIVAHRLSTIRNASLIAVIDDGKVAEQGSHSHLLKNHADGIYARMIQLQRFTHGQVVEMTSGSSSSARPKDDERES 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5411g00041 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 816 1063 IPR027417 -
Pral5411g00041 1090 ProSitePatterns ABC transporters family signature. 308 322 IPR017871 GO:0005524|GO:0016887
Pral5411g00041 1090 ProSitePatterns ABC transporters family signature. 963 977 IPR017871 GO:0005524|GO:0016887
Pral5411g00041 1090 FunFam ABC transporter B family member 19 790 812 - -
Pral5411g00041 1090 FunFam ABC transporter B family member 1 815 1064 - -
Pral5411g00041 1090 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 134 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5411g00041 1090 Pfam ABC transporter 187 336 IPR003439 GO:0005524
Pral5411g00041 1090 CDD ABC_MTABC3_MDL1_MDL2 169 408 - -
Pral5411g00041 1090 SUPERFAMILY ABC transporter transmembrane region 2 153 IPR036640 GO:0005524|GO:0016020
Pral5411g00041 1090 FunFam ABC transporter B family member 1 159 409 - -
Pral5411g00041 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 408 IPR027417 -
Pral5411g00041 1090 SMART AAA_5 851 1043 IPR003593 GO:0016887
Pral5411g00041 1090 SMART AAA_5 196 382 IPR003593 GO:0016887
Pral5411g00041 1090 CDD ABC_6TM_Pgp_ABCB1_D2_like 490 806 - -
Pral5411g00041 1090 SUPERFAMILY ABC transporter transmembrane region 488 811 IPR036640 GO:0005524|GO:0016020
Pral5411g00041 1090 Pfam ABC transporter 843 991 IPR003439 GO:0005524
Pral5411g00041 1090 Gene3D - 822 1069 IPR027417 -
Pral5411g00041 1090 Gene3D ABC transporter type 1, transmembrane domain 2 421 IPR036640 GO:0005524|GO:0016020
Pral5411g00041 1090 Gene3D ABC transporter type 1, transmembrane domain 464 671 IPR036640 GO:0005524|GO:0016020
Pral5411g00041 1090 Gene3D ABC transporter type 1, transmembrane domain 722 821 IPR036640 GO:0005524|GO:0016020
Pral5411g00041 1090 Gene3D - 159 409 IPR027417 -
Pral5411g00041 1090 FunFam ABC transporter B family member 1 480 789 - -
Pral5411g00041 1090 Pfam ABC transporter transmembrane region 502 771 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5411g00041 1090 Pfam ABC transporter transmembrane region 3 118 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5411g00041 1090 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 171 405 IPR003439 GO:0005524
Pral5411g00041 1090 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 824 1060 IPR003439 GO:0005524
Pral5411g00041 1090 CDD ABC_MTABC3_MDL1_MDL2 824 1063 - -
Pral5411g00041 1090 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 501 788 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5411g00041 1090 PANTHER ABC TRANSPORTER B FAMILY 2 513 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5411g00041 Pral-Chr5411 196577 201761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5411g00041 1 1087 Calmodulin-binding Proteins AT2G36910 88.603 0.0 1965
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5411g00041 K05658 - gmx:100814667 1934.84