Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5411g00008 ATGTTGATGGCTAGCATAAGAAGTCTCATGTCGAAGCCAGATTATGACATGAATGCAAGAAACATGTTGATGGAGAGGAAGAAACTTTCAAGGGTGTTTTCTGAGGATTATGATGCCTCGAAAAGAAAGATATTCGATCCCAGGGAACCAAGAGTAAACAGATGGAACAAAATGTTCTTAGTAGCATGTTTGATTTCACTATTTGTGGATCCCTTCTTCTTTTACTTGCGAGAGGCTACGAAAGACAAGTGCATTGCTATATCTACCGGACTCGAAGTTTCCCTTACCACAATTCGGTCCATGGTCGATGCGTTTTACATCATCCATGTATTTATTCGGTTTCAAACTGCCTACGTCGCTCCTTCCTCTCGTGTTTTTGGTAGAGGAGAGCTAGTTATAGACCCTACAAAGATTGCATCAAGGTACTTCCAAAAACACTTCTGGCTTGATCTTCTGGCAGCCCTCCCTCTTCCCCAGGTGTTGATTATAGCTGTAATTCCAAATCTAAAAGGGTCACAAATGATGGCTTCAAGGCAGAGTCTGCGCCTTGTGATCATTTTCCAGTACCTATTGAGGTTATATCATATCTTCCCTCTCTCATCTGAAATAGTCAAGGCAAATGGAGTAATGATGGAAAAAACCTGGGCTGGGGCAGCATATAACCTTATGCTCTATATGCTAGCAAGTCATGTCTTAGGATCCTCCTGGTACCTGTTGGCAGTCGAAAGGCAGGATGAGTGTTGGAAAAAAGCTTGTAATCTTGAGTTCCCATATTGTCAATACCGGTATCTTGATTGTCAAAGTACAAGTGATCCAGCCAGAGCAGCCTGGTTTAGATCAAGCAACCTGTCAACTTTATGTGATAAGAGTAGTGATTTCTTTCAGTTTGGTATTTTTGCCGATGCTCTCACTTTGGAAATGGCAGACTCAAAGTTCTTAAGCCGATATTATTATTGTCTTTGGTGGGGCCTGCGGAATCTCAGCTCTCTGGGACAGAATCTCCTAACCAGTACTAACGTTGGAGAGATAAATTTTGCTGTGATTATTGCAATTCTTGGGTTGGTGCTTTTTGCACTTCTAATAGGAAATATGCAAACGTATCTGCAATCAACTACTTTGCGATTGGAAGAGTGGAGAATAAGACGCACAGACACAGAGCGATGGATGCATCATAGGCAGTTACCTCATAACTTGAAGCAAAGTGTGAGACGCTACGAGCAATTCAGATGGGTTGCTACACGAGGAGTTGACGAGGAATCCATCCTTCGGGACCTGCCTGTTGATATCAGACGCGACATCAAACGCCACCTGTGTCTCAACCTCGTCCGACAAGTACCCCTGTTTGATCAGATGGACGAGAGGGTGCTCGACGCCATATGTGAAAGACTGAAACCTTCTCTATGTGTTCAAGGAACTCTCCTAGTTCGCGAAGGAGATCCTGTGACTGAAATGAGTTTTGTCATTCGAGGACGTCTAGATTCTTGTACCACTAATGGTGGCAGAAGCGGGTTCTTCAATTGTTGTAGGATCGGACCAGGTGATTTTTGCGGCGACGAGCTTTTGCCATGGGCCCTGGACCCACGTCCAAGTGCCGTTCTTCCTTCATCAACTCGCACAGTGAAAGCCCTAACAGAAGTGGAAGCCTTCGCGCTCATAGCCGAAGACTTGAAGTTTGTGGCAGCTCAGTTCAGGAGGCTACACAGCAAGCAACTGAGGCACACGTTCAGGTTTCACTCACATCAATGGAGGACGTGGGCTGCTTGCTTCATACAAGCGGCTTGGTTTCGATATAAGAGAAGGAAAGAGGCGAGCGAGCTAAATCATCATATGGTGGATGCTAGGGAAACTAGGGTGGAACATTTCTCTGCACCTTTGCACTTGCAACCTCGAATAGGTTCGAGTACTACCATGTATAAAGCGGCCAATTTGATATGCAGCCCAAGGAAAGGTGGAAGCTTGCGATATGCTTCTGAATTTGATATTCTTGTTTCACTCAGGAAGCCTCTTGAACCTGACTTCAGTACTGTTGAAGACTGA 2037 0.4482 MLMASIRSLMSKPDYDMNARNMLMERKKLSRVFSEDYDASKRKIFDPREPRVNRWNKMFLVACLISLFVDPFFFYLREATKDKCIAISTGLEVSLTTIRSMVDAFYIIHVFIRFQTAYVAPSSRVFGRGELVIDPTKIASRYFQKHFWLDLLAALPLPQVLIIAVIPNLKGSQMMASRQSLRLVIIFQYLLRLYHIFPLSSEIVKANGVMMEKTWAGAAYNLMLYMLASHVLGSSWYLLAVERQDECWKKACNLEFPYCQYRYLDCQSTSDPARAAWFRSSNLSTLCDKSSDFFQFGIFADALTLEMADSKFLSRYYYCLWWGLRNLSSLGQNLLTSTNVGEINFAVIIAILGLVLFALLIGNMQTYLQSTTLRLEEWRIRRTDTERWMHHRQLPHNLKQSVRRYEQFRWVATRGVDEESILRDLPVDIRRDIKRHLCLNLVRQVPLFDQMDERVLDAICERLKPSLCVQGTLLVREGDPVTEMSFVIRGRLDSCTTNGGRSGFFNCCRIGPGDFCGDELLPWALDPRPSAVLPSSTRTVKALTEVEAFALIAEDLKFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQAAWFRYKRRKEASELNHHMVDARETRVEHFSAPLHLQPRIGSSTTMYKAANLICSPRKGGSLRYASEFDILVSLRKPLEPDFSTVED 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5411g00008 678 ProSiteProfiles cAMP/cGMP binding motif profile. 447 532 IPR000595 -
Pral5411g00008 678 FunFam Cyclic nucleotide-gated ion channel 1 445 563 - -
Pral5411g00008 678 CDD CAP_ED 447 578 IPR000595 -
Pral5411g00008 678 Pfam Ion transport protein 55 374 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pral5411g00008 678 FunFam Cyclic nucleotide-gated ion channel 1 374 438 - -
Pral5411g00008 678 Gene3D - 57 371 - -
Pral5411g00008 678 PRINTS EAG/ELK/ERG potassium channel family signature 316 333 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5411g00008 678 PRINTS EAG/ELK/ERG potassium channel family signature 410 417 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5411g00008 678 PRINTS EAG/ELK/ERG potassium channel family signature 342 353 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5411g00008 678 PRINTS EAG/ELK/ERG potassium channel family signature 227 237 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5411g00008 678 PRINTS EAG/ELK/ERG potassium channel family signature 360 369 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5411g00008 678 PRINTS EAG/ELK/ERG potassium channel family signature 110 119 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral5411g00008 678 Gene3D Jelly Rolls 445 565 IPR014710 -
Pral5411g00008 678 SUPERFAMILY cAMP-binding domain-like 377 569 IPR018490 -
Pral5411g00008 678 Gene3D Helix hairpin bin 375 438 - -
Pral5411g00008 678 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 32 629 - -
Pral5411g00008 678 SMART cnmp_10 447 578 IPR000595 -
Pral5411g00008 678 SUPERFAMILY Voltage-gated potassium channels 47 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5411g00008 Pral-Chr5411 42837 45740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5411g00008 17 675 Ion Channels AT2G28260 63.733 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5411g00008 K05391 - gmx:100815543 1026.93