Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5410g00011 ATGGCCACGGACCTCGAGGGAGCCGCTCCTCACAAGGACTACCATGACCCCCCTCCCGCTCCCCTCTTCGACACCGCCGAGCTCCGCAAGTGGTCTTTCCACAGGGCTGTCATTGCCGAGTTCGTGGCCACCCTCCTGTTCCTCTACATCACTGTCTTGACTGTAATTGGTTACAAAAGCCAGACTCACAACGGTACCGCCTGCGATGGCGTCGGCCTTCTTGGCGTTGCCTGGGCTTTTGGCGGCATGATTTTCGTCCTCGTTTACTGCACTGCCGGCATTTCTGGAGGACACATAAACCCGGCGGTGACATTCGGGCTGTTTCTGGCCAGGAAGGTGTCGCTGATTAGAGCGATTATGTACGTATTGGCTCAGTGCCTGGGAGCCATATGTGGGTGTGGCTTGGTCAAGGCTTTCCAGAAGGCCTACTACAACCGTTATCAAGGTGGAGCCAACATGTTGTCTTCTGGCTACAGCAAAGGCACTGGCTTGGGTGCTGAGATTATAGGCACCTTCGTCCTTGTCTACACCGTCTTCTCTGCCACTGATCCCAAGAGAAATGCCAGAGACTCTTACGTTCCCGTGCTGGCTCCTCTTCCAATTGGATTTGCGGTGTTCATGGTTCACCTGGCCACCATCCCCATCACCGGCACCGGCATCAACCCGGCCAGGAGCTTCGGTGCCGCAGTCATGTACAACAATGAGAAGGCATGGGATGACCATTGGATCTTCTGGGTTGGACCCTTCATCGGTGCGGCCATTGCGGCATTTTACCACCAATTTGTGTTGAGAGCTCAGGCGGCCAAAGCTCTGGGGTCTTTCAGGAGCCACTCCAACTTGTAA 843 0.5552 MATDLEGAAPHKDYHDPPPAPLFDTAELRKWSFHRAVIAEFVATLLFLYITVLTVIGYKSQTHNGTACDGVGLLGVAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYVLAQCLGAICGCGLVKAFQKAYYNRYQGGANMLSSGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSYVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVMYNNEKAWDDHWIFWVGPFIGAAIAAFYHQFVLRAQAAKALGSFRSHSNL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5410g00011 280 FunFam Probable aquaporin PIP1-2 20 278 - -
Pral5410g00011 280 Pfam Major intrinsic protein 27 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5410g00011 280 SUPERFAMILY Aquaporin-like 27 264 IPR023271 -
Pral5410g00011 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5410g00011 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5410g00011 280 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5410g00011 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5410g00011 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5410g00011 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5410g00011 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 274 IPR034294 -
Pral5410g00011 280 Gene3D Glycerol uptake facilitator protein. 20 280 IPR023271 -
Pral5410g00011 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Pral5410g00011 280 CDD MIP 35 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral5410g00011 280 NCBIfam MIP family channel protein 39 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5410g00011 Pral-Chr5410 28198 29746 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5410g00011 1 280 Major Intrinsic Protein MIP AT2G37170 79.649 2.42e-168 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5410g00011 K09872 - rcu:8284532 487.648