Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5410g00004 ATGAAGATTCCTCGTTCATTTCTCGCCTGTTTCTCGGCAACAGTCAAAGACCCAAGACAGCTAGGTATATCCCTTCCGCTGATCGACATCACTGGGAAAGCATTTCGTGTATTCTCTCGCAGCGAATTGAAATTGGCCACTCGTGGTTTCAATTCCTGGGACAAGATTGGACAAGGGGGATTCGGTTCTGTTTACAAGGGGCAACTTAGGAACGGCAATGTAGTGGCCGTGAAAGTGCTTTCAATCGAACTGGAATCCATGCGAGGAGAAACTGAGTTCGTGGCAGAATTGGCCACAATGTCTCGTATCAAGCACGAAAATTTAGTTAGTCTTCAAGGTTGTTGCGTCGAAGAAGCCCGACGATATTTAGTCTTCGATTACATGGAAAACAATAGCCTGTCCCGCACCTTTTTAGGCACAGAGGAAAGCAGGATGAAATTCAGATGGGAATTGAGGAGGAACATATCTATAGGCGTGGCTCGTGGCCTTGCCTATCTCCATGAGCAACTAAAACCCCACATTGTCCACAGAGATATCAAACCCAGCAACATCCTTCTCGATCAAGACTTCACACCCAAACTATCTGACTTCGGTTTCGCAAAGTTATTTATGGACGGCGAGTCCTACGTCAGTACTAGAGTCGCAGGGACATTAGGCTATCTTGCTCCGGAGTATGCCACTACTGGAAAGTTGACGCGAAAGTCGGATGTTTATAGCTTTGGAGTATTACTCTTACAAATTGTTAGCGGCCAACCGGCAGTTGATGCTTATCAGGACATGGATCGTTTCCTAGTAGAGAAGGTGTGGGCGGCTTATAAAGCCGAAGAGCTAGCAAAAATGGTGGATCCTATGATTACAAATGTGAACTTGGTAGCGGAAGAAGTAGTTCGATTCCTAAAAGTGGGGCTGCTTTGCGTGCAAGAAATCGCCAGGCTTCGGCCACGAATGACAGAGGCCGTTGAAATGTTGAGCGGCAGCTATAATATTAATGACATGGAAGGTGTTCCTATTTCAAAACCAGGCTTTGTTGCTGATCTCAGAAACATCAAAATAAGGCAGCAAATGCCTGTAACTGTAAGTCCCGAATCCATTTCCAGTGGAGCCAACCAGGATATTTGGAGTTCCGTCATTGTCGCCCGTTAA 1143 0.4611 MKIPRSFLACFSATVKDPRQLGISLPLIDITGKAFRVFSRSELKLATRGFNSWDKIGQGGFGSVYKGQLRNGNVVAVKVLSIELESMRGETEFVAELATMSRIKHENLVSLQGCCVEEARRYLVFDYMENNSLSRTFLGTEESRMKFRWELRRNISIGVARGLAYLHEQLKPHIVHRDIKPSNILLDQDFTPKLSDFGFAKLFMDGESYVSTRVAGTLGYLAPEYATTGKLTRKSDVYSFGVLLLQIVSGQPAVDAYQDMDRFLVEKVWAAYKAEELAKMVDPMITNVNLVAEEVVRFLKVGLLCVQEIARLRPRMTEAVEMLSGSYNINDMEGVPISKPGFVADLRNIKIRQQMPVTVSPESISSGANQDIWSSVIVAR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5410g00004 380 Pfam Protein kinase domain 53 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5410g00004 380 Gene3D Phosphorylase Kinase; domain 1 22 127 - -
Pral5410g00004 380 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 27 127 - -
Pral5410g00004 380 ProSiteProfiles Protein kinase domain profile. 50 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5410g00004 380 SMART serkin_6 50 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5410g00004 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Pral5410g00004 380 SUPERFAMILY Protein kinase-like (PK-like) 30 323 IPR011009 -
Pral5410g00004 380 ProSitePatterns Protein kinases ATP-binding region signature. 56 78 IPR017441 GO:0005524
Pral5410g00004 380 CDD STKc_IRAK 56 323 - -
Pral5410g00004 380 Gene3D Transferase(Phosphotransferase) domain 1 128 335 - -
Pral5410g00004 380 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 360 - -
Pral5410g00004 380 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g29720 128 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5410g00004 Pral-Chr5410 9500 11517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5410g00004 37 345 Receptor kinase-like Gene Family AT1G56120 46.452 1.88e-87 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral5410g00004 Pkinase 1.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5410g00004 - - gmx:100813945 461.455