Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5410g00003 ATGGGCAACATAGGAAGTAGCAGCGCTAACGGCCGTCGGAGAAGCAATAGCAGAAGGAATCATCCGCCGCCGCCGCCGTTTAGGCCGCAGCCAGAAATCGCGTCGAATCGGTCTGCGCTTCCAGCATCTACACATCAGACATCGCAATACCCAAACTCGAATCCTTCCCCGTATTTCCAGGACGCAGGTCACTATTCCTCTCCCCATCAGGCTATGCCGGCGCCTTTGCCGGCTCCTCTCGATCACCACCATCGCGCGAGGCCTCATCATCAAACGGACCCATCAAGGACGGGTGGAAGTTACCATTGCAGGCCTGCTATCCCTCCGCTTCCGTATGTAGAGCATCGGAAGGCGGTTACTATAAGGAACGATGTTAATGTCAAGAAGGAGACTCTAAGGATTGAACCCGATGAGCAAAATCCTGGGCGGTTCCTTGTTGCATTCACATTCGATGCCATCGTTGATGGGAGCATCACCATTCTTTTCTTTGGTAAAGTAGATGATAGCTGCATCCTCACACCAATGAAGCAAAATATTCTAGGCCCCGTAACTGTAAGTTTCCAGCAAGGTCTTGGTCAGCAGTTTAGGCAGCCGATCGGAACTGGTATTGACTTTTCAATCTTTGAGGAGTCAGAATTATCAGAAGCGGGTGTAAGAGATGTGTTCCCTTTAGCAGTGAAGGCGGATGCTTCCTGTGAAAAACAAGATGGATCAAATGAAAATTTAACATCTGGCAACAGAAACTCTCAGATAACTCTCGCAGCATTTGGGAAGGAGAAAGGAGAATTCCGGGTAAAGGTAGTTAAGCAGATCTTATGGGTAAATGAAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACCTGGACGAAAATGATTCTGGAAAGGAGTGTGTTATCTGCCTCTCAGAACCACGAGACACAACTGTTCTCCCCTGCCGACACATGTGTTTGTGTAGCGGGTGCGCTAAGGTTCTGAGGTTTCAGACGAATAGATGCCCAATTTGCAGACAGCCAGTTGAGAGGCTTTTGGAGATAAAGGTCAATAATGATAACAGACCTGAGGACTGA 1089 0.483 MGNIGSSSANGRRRSNSRRNHPPPPPFRPQPEIASNRSALPASTHQTSQYPNSNPSPYFQDAGHYSSPHQAMPAPLPAPLDHHHRARPHHQTDPSRTGGSYHCRPAIPPLPYVEHRKAVTIRNDVNVKKETLRIEPDEQNPGRFLVAFTFDAIVDGSITILFFGKVDDSCILTPMKQNILGPVTVSFQQGLGQQFRQPIGTGIDFSIFEESELSEAGVRDVFPLAVKADASCEKQDGSNENLTSGNRNSQITLAAFGKEKGEFRVKVVKQILWVNEMRYELQEIYGIGNSVESDLDENDSGKECVICLSEPRDTTVLPCRHMCLCSGCAKVLRFQTNRCPICRQPVERLLEIKVNNDNRPED 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5410g00003 362 PIRSF SBP1_RNase_bind 228 354 IPR017066 -
Pral5410g00003 362 PIRSF SBP1_RNase_bind 14 100 IPR017066 -
Pral5410g00003 362 SUPERFAMILY RING/U-box 303 349 - -
Pral5410g00003 362 MobiDBLite consensus disorder prediction 36 63 - -
Pral5410g00003 362 SMART ring_2 304 342 IPR001841 -
Pral5410g00003 362 MobiDBLite consensus disorder prediction 1 107 - -
Pral5410g00003 362 ProSiteProfiles Zinc finger RING-type profile. 304 343 IPR001841 -
Pral5410g00003 362 FunFam probable E3 ubiquitin-protein ligase LOG2 288 353 - -
Pral5410g00003 362 Pfam Zinc finger, C3HC4 type (RING finger) 302 348 - -
Pral5410g00003 362 PANTHER MAHOGUNIN 1 356 IPR045194 GO:0061630
Pral5410g00003 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 353 IPR013083 -
Pral5410g00003 362 CDD mRING-HC-C3HC5_MGRN1-like 302 343 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5410g00003 Pral-Chr5410 3457 6220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5410g00003 109 323 C3H Transcription Factor Family AT3G09770 61.364 1.68e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5410g00003 - - twl:120013656 461.455