Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5409g00068 ATGCAAATGCTATCTGGCGACCCCTTTTCCTTATCCTCTTCCATCGGAGGGTTTGCTCCTGAGCCAAACCCAAACCCAAACCCTAACCCTAAACTTAATCCTCCTCCCCTCCCTAAGAAGAAGAGGAATCTTCCAGGAACACCAGATCCAGATGCGGAGGTCATCGCCCTTTCGCCCAAGTCTCTCATGGCTACCAATCGATTCATCTGTGAAATATGCAACAAAGGTTTCCAGAGAGACCAAAACCTGCAGCTTCACCGAAGGGGACACAACCTCCCATGGAAGCTGCGACAAAGGTCGAACAAGGAGGTCCGGAAGAAGGTGTACATATGCCCAGAGAAGACATGCGTACACCACGACCCCTCCAGAGCATTGGGGGACCTCACCGGGATAAAGAAGCATTACAGCAGAAAACACGGGGAGAAGAAGTGGAAGTGCGACAAGTGTTCGAAGAAATACGCTGTCCAGTCCGATTGGAAAGCTCACACCAAAACTTGCGGTACTAGAGAATATAAGTGCGATTGTGGTACCCTCTTCTCTAGGAAAGACAGTTTCATCACCCACAGAGCCTTCTGCGATGCCTTGACAGAAGAGAGTGCGAGACTTACCTCAGTTGGAACGTCAGATTTAAATTTTAAGAACGAAGAGAGTGTAATGAACTCTACTTCTCAGCTTAGCTCGGCACACGGATTTTGCGTTTCGCAATTCGGTGCAAATGGGTTTCGTTCAGAATTTGAAGGAATGGGCATGACTATGGGTGGAGCCGACCAGCAAATGAGGCCCAGTTTGTCGTTGTGGTTGAACCAGCTGGGAAATCCCCGCATCAATAATCCTCTAGAAGTGGGACCTAATTCTGGTCTTTATGTGTCATCTTCAAGTTCTTCAGGTTTGCCCGAGATCAATATGCAAATGCCTCAACCTAATAACACCTTTGCTCCTTCTTCTTTGTGTAATTATTCCCCATCGACACTCCCTATTGGGAAAAAAGGAGAAAGTAGCGGAACTGGAAACTTAGTATCTATTTATAATTCTGACGCTCGAAACAATCAATCAAAGCCAGCTTCTCCCATGTCAGCCACTGCACTTCTACAGAAAGCAGCTCAGATAGGCTCAACCAGAAGCAGCAACCCTTCCATATTTAGCGGCAGTTTTGGGGTAATGAGCTCGTCTTCTTCCCAAACTACGGCAAGTCTCGAAAATAACGCAGACCAAAACCGTAACAACGAGCTGAACCAAATGTATCAGAGTATGAAGCAATCAGAGAATTTTAGTTCAAGTAGCAGTGGTGTAGGTACGTTGGGGATGAGCAATAACTTCAGCTCATTGACGCATTCATCGAACAGTGGCCTTGATGAGCTTGTGTCGCAATCCCGTGGAAGACAAAGTAACAAACAAGTGCAATTGAAGCTGCATCCTGATTCAAACACTGGGGAACATGGTTACACCAGAGATTTTCTGGGAATGAGCGGAGCAGGAGGAGCTGGTACTCCTTTCCTTCCCGAAGAGCTCGCTAAATTTGCTTCCATTGCCTCATCCATGGGAATGTCTCAGTTCACGAGTAGTACTACTCAGTAA 1575 0.4686 MQMLSGDPFSLSSSIGGFAPEPNPNPNPNPKLNPPPLPKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEESARLTSVGTSDLNFKNEESVMNSTSQLSSAHGFCVSQFGANGFRSEFEGMGMTMGGADQQMRPSLSLWLNQLGNPRINNPLEVGPNSGLYVSSSSSSGLPEINMQMPQPNNTFAPSSLCNYSPSTLPIGKKGESSGTGNLVSIYNSDARNNQSKPASPMSATALLQKAAQIGSTRSSNPSIFSGSFGVMSSSSSQTTASLENNADQNRNNELNQMYQSMKQSENFSSSSSGVGTLGMSNNFSSLTHSSNSGLDELVSQSRGRQSNKQVQLKLHPDSNTGEHGYTRDFLGMSGAGGAGTPFLPEELAKFASIASSMGMSQFTSSTTQ 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5409g00068 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Pral5409g00068 524 MobiDBLite consensus disorder prediction 1 20 - -
Pral5409g00068 524 Gene3D Classic Zinc Finger 47 120 - -
Pral5409g00068 524 FunFam protein indeterminate-domain 12-like 47 115 - -
Pral5409g00068 524 SUPERFAMILY beta-beta-alpha zinc fingers 67 164 IPR036236 -
Pral5409g00068 524 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
Pral5409g00068 524 MobiDBLite consensus disorder prediction 1 53 - -
Pral5409g00068 524 MobiDBLite consensus disorder prediction 444 484 - -
Pral5409g00068 524 MobiDBLite consensus disorder prediction 444 472 - -
Pral5409g00068 524 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Pral5409g00068 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 501 IPR031140 -
Pral5409g00068 524 SMART c2h2final6 68 90 IPR013087 -
Pral5409g00068 524 SMART c2h2final6 109 139 IPR013087 -
Pral5409g00068 524 SMART c2h2final6 144 164 IPR013087 -
Pral5409g00068 524 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Pral5409g00068 524 Gene3D Classic Zinc Finger 122 201 - -
Pral5409g00068 524 MobiDBLite consensus disorder prediction 21 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5409g00068 Pral-Chr5409 265973 268683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5409g00068 1 248 IDZ Gene Family AT5G03150 64.894 4.91e-123 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5409g00068 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5409g00068 K25870 - gmx:100811274 571.622