Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5409g00065 ATGGGACATAGACATTTATATAGCATGTCCCAGATGTTTGGGAGTGAGCAGGAGCAGAATTGGAATTATATGCACACTGATCAACATAATGGTAGGGGTAGCGCTTCAGAGAATGGTTCTTTTATTTATCCACTAGAAAATATGCCTATAGATGGCAGCTCTTTGGCCGCTTCTTGGAACAATGCCGCGATGTCAAATGGATATGCATCCTCAAGTATCAACATTGAATTACCCCCTCGTCAATCAGATGCATCAAGATCTTCTCATGATCATTATTTACGTTCATCAAATCCTGGAGCTTTTTTCGCAGTTTCTGAAAACTATGCTCACCAGCCTTCTTCCAATTGTGATAGACAAGCATTTCATGTTGCTGATGGTGATTTCTTTGATTTCACCATGGGGAGTGGAAGAGGGCCTCACAAGCGAAAGAGCCCTGGAATTCCTTCAGTTTGTGAGAGAGGCAGTACAAGCAGATATTTCAGTGCAGGAAGCTCAACTGATCTCCCTATATCTTCAGAAATAAGGCAGGAGAAGCCAAGCTTGGATTCTCAATTTCTGCCTTGGGATCATGTTACTATGACACCCCCCTTCAGAGGCAGTGGCCTTTCAATCAGGGAATCAAGTGGATATAATCATGAGCCAAGTCGCTTGCTGGTTGGAAGTGGTGTTAGTAATGCTTCGGTAGACGCTGGGAGTTACCATCATGAATATGATACAAGCATAAATCCTATTGTTCCTCAAAGTTTTCACAGTAATCTCACTCACCCTGCTAGGGGAGTTCGAAGTAACTATTCCCAAAGATCTACTCCAACACCAACTCCAACTTTTAGAGCCTCTTCAAGCTCATGCGTGGGACATATGATGCCTTCAGATGGTGGATTGCACATGGGAGCTGAAGGTTTAATCTCTAGACATCCAAGGCCATTGACTGCCGTCAGTTCGCGGAATACTGATAGAAACGGGAGGTCAAGGATATCTAGCGAGAGATATCGAACATTAGCTGATGAGGCTATTCTTCATGATCGATTTTCCTCTGAGGGTTTCATGGTTGTTGATCGTGCGCCGTTTTATGGTTCTCGAAATATGATTGATCAACATAGGGACATGAGGATGGACATAGACAATATGAGTTATGAGGAACTACTTGCTCTGGGAGAGAGGATTGGTCATGTCAGCACAGGATTGTCTGAGAAGTTGATTTCCAAGTGTTTGACAGAATCAATATATTGTTCGTCCGAGCAGAGTCAAGAGGAAGGAAGTTGTGTGATCTGCTTGGAAGATTACAAGTACATGGACGATGTTGGGACACTGAGAGGTTGCGGCCATGACTATCATGTGAGCTGCATTAGAAAGTGGTTATCTATGAAGAACATATGTCCTATCTGCAAAGCTTCTGCTCTTCCTGATGAGATGAAGGATAAATAA 1425 0.4323 MGHRHLYSMSQMFGSEQEQNWNYMHTDQHNGRGSASENGSFIYPLENMPIDGSSLAASWNNAAMSNGYASSSINIELPPRQSDASRSSHDHYLRSSNPGAFFAVSENYAHQPSSNCDRQAFHVADGDFFDFTMGSGRGPHKRKSPGIPSVCERGSTSRYFSAGSSTDLPISSEIRQEKPSLDSQFLPWDHVTMTPPFRGSGLSIRESSGYNHEPSRLLVGSGVSNASVDAGSYHHEYDTSINPIVPQSFHSNLTHPARGVRSNYSQRSTPTPTPTFRASSSSCVGHMMPSDGGLHMGAEGLISRHPRPLTAVSSRNTDRNGRSRISSERYRTLADEAILHDRFSSEGFMVVDRAPFYGSRNMIDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEKLISKCLTESIYCSSEQSQEEGSCVICLEDYKYMDDVGTLRGCGHDYHVSCIRKWLSMKNICPICKASALPDEMKDK 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5409g00065 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 467 IPR013083 -
Pral5409g00065 474 SMART ring_2 421 462 IPR001841 -
Pral5409g00065 474 SUPERFAMILY RING/U-box 411 467 - -
Pral5409g00065 474 Pfam Ring finger domain 420 463 IPR001841 -
Pral5409g00065 474 CDD RING-H2_RNF24-like 421 466 - -
Pral5409g00065 474 MobiDBLite consensus disorder prediction 254 283 - -
Pral5409g00065 474 ProSiteProfiles Zinc finger RING-type profile. 421 463 IPR001841 -
Pral5409g00065 474 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 85 467 IPR045191 GO:0061630
Pral5409g00065 474 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 386 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5409g00065 Pral-Chr5409 238078 241636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5409g00065 204 473 C3H Transcription Factor Family AT2G37150 48.727 2.78e-63 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5409g00065 - - jre:109011170 452.595