Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5409g00059 ATGGGACATAGACATTTATATAGCATGTCCCAGATGTTTGGGAGTGAGCAGGAGCAGAATTGGAATTATATGCACACTGATCAACATAATGGTAGGGGTAGCGCTTCAGAGAATGGTTCTTTTATTTATCCACTAGAAAATATGCCTATAGATGGCAGCTCTTTGGCCGCTTCTTGGAACAATGCCGCGATGTCAAATGGATATGCATCCTCAAGTATCAACATTGAATTACCCCCTCGTCAATCAGATGCATCAAGATCTTCTCATGATCATTATTTACGTTCATCAAATCCTGGAGCTTTTTTCGCAGTTTCTGAAAACTATGCTCACCAGCCTTCTTCCAATTGTGATAGACAAGCATTTCATGTTGCTGATGGTGATTTCTTTGATTTCACCATGGGGAGTGGAAGAGGGCCTCACAAGCGAAAGAGCCCTGGAATTCCTTCAGTTTGTGAGAGAGGCAGTACAAGCAGATATTTCAGTGCAGGAAGCTCAACTGATCTCCCTATATCTTCAGAAATAAGGCAGGAGAAGCCAAGCTTGGATTCTCAATTTCTGCCTTGGGATCATGTTACTATGACACCCCCCTTCAGAGGCAGTGGCCTTTCAATCAGGGGTGAGGGTTCTTTAAGGAATGTTAGAAGTCGTTCTGCACTTGATTTGGAATCCAACCTTGCTAGGACGCATTTATGTGGCAACCATTTGCACAACTCATCTTCTGGCCCGTCCAATGATCATTCTAGCTCTGTGGGTCTTTCTGGTCATAGTTCTAATACTGTGCCAAGGGACTGGAGCCAAATGAACATGTCTCCGGCTCCTGGGAGGGTATTATTATCTGAATCAAGTGGATATAATCATGAGCCAAGTCGCTTGCTGGTTGGAAGTGGTGTTAGTAATGCTTCGGTAGACGCTGGGAGTTACCATCATGAATATGATACAAGCATAAATCCTATTGTTCCTCAAAGTTTTCACAGTAATCTCACTCACCCTGCTAGGGGAGTTCGAAGTAACTATTCCCAAAGATCTACTCCAACACCAACTCCAACTTTTAGAGCCTCTTCAAGCTCATGCGTGGGACATATGATGCCTTCAGATGGTGGATTGCACATGGGAGCTGAAGGTTTAATCTCTAGACATCCAAGGCCATTGACTGCCGTCAGTTCGCGGAATACTGATAGAAACGGGAGGTCAAGGATATCTAGCGAGAGATATCGAACATTAGCTGATGAGGCTATTCTTCATGATCGATTTTCCTCTGAGGGTTTCATGGTTGTTGATCGTGCGCCGTTTTATGGTTCTCGAAATATGATTGATCAACATAGGGACATGAGGATGGACATAGACAATATGAGTTATGAGGAACTACTTGCTCTGGGAGAGAGGATTGGTCATGTCAGCACAGGATTGTCTGAGAAGTTGATTTCCAAGTGTTTGACAGAATCAATATATTGTTCGTCCGAGCAGAGTCAAGAGGAAGGAAGTTGTGTGATCTGCTTGGAAGATTACAAGTACATGGACGATGTTGGGACACTGAGAGGTTGCGGCCATGACTATCATGTGAGCTGCATTAGAAAGTGGTTATCTATGAAGAACATATGTCCTATCTGCAAAGCTTCTGCTCTTCCTGATGAGATGAAGGATAAATAA 1647 0.4359 MGHRHLYSMSQMFGSEQEQNWNYMHTDQHNGRGSASENGSFIYPLENMPIDGSSLAASWNNAAMSNGYASSSINIELPPRQSDASRSSHDHYLRSSNPGAFFAVSENYAHQPSSNCDRQAFHVADGDFFDFTMGSGRGPHKRKSPGIPSVCERGSTSRYFSAGSSTDLPISSEIRQEKPSLDSQFLPWDHVTMTPPFRGSGLSIRGEGSLRNVRSRSALDLESNLARTHLCGNHLHNSSSGPSNDHSSSVGLSGHSSNTVPRDWSQMNMSPAPGRVLLSESSGYNHEPSRLLVGSGVSNASVDAGSYHHEYDTSINPIVPQSFHSNLTHPARGVRSNYSQRSTPTPTPTFRASSSSCVGHMMPSDGGLHMGAEGLISRHPRPLTAVSSRNTDRNGRSRISSERYRTLADEAILHDRFSSEGFMVVDRAPFYGSRNMIDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEKLISKCLTESIYCSSEQSQEEGSCVICLEDYKYMDDVGTLRGCGHDYHVSCIRKWLSMKNICPICKASALPDEMKDK 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5409g00059 548 SMART ring_2 495 536 IPR001841 -
Pral5409g00059 548 ProSiteProfiles Zinc finger RING-type profile. 495 537 IPR001841 -
Pral5409g00059 548 CDD RING-H2_RNF24-like 495 540 - -
Pral5409g00059 548 MobiDBLite consensus disorder prediction 331 357 - -
Pral5409g00059 548 Pfam Ring finger domain 494 537 IPR001841 -
Pral5409g00059 548 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 137 541 IPR045191 GO:0061630
Pral5409g00059 548 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 460 541 - -
Pral5409g00059 548 MobiDBLite consensus disorder prediction 232 282 - -
Pral5409g00059 548 MobiDBLite consensus disorder prediction 232 266 - -
Pral5409g00059 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 541 IPR013083 -
Pral5409g00059 548 SUPERFAMILY RING/U-box 485 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5409g00059 Pral-Chr5409 238078 241642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5409g00059 1 547 C3H Transcription Factor Family AT2G37150 41.637 5.15e-105 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5409g00059 - - qsa:O6P43_006681 772.696