Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5409g00035 ATGGCTGATGCTCCGGCCAGTCCTGGCGCTGGTGGTAGCCACGAGAGCGGCGATCAGAGCCCCCGCTCTAATGTCCGAGAGCAGGACAGGTACCTGCCCATCGCCAATATCAGCCGAATCATGAAGAAGGGACTTCCTGCTAATGGAAAAATTGCCAAGGATGCCAAGGAGACCGTGCAGGAATGCGTTTCCGAGTTCATCAGCTTTGTCACCAGCGAGGCGAGTGATAAGTGTCAGAGGGAAAAGAGGAAGACGATTAACGGCGATGATTTACTTTGGGCAATGGCAACTTTAGGGTTCGAGGATTACATCGATCCCCTGAAGATTTATCTGGGCAGATACAGGGAGATGGAGGGTGATACCAAGGGTTCGGCGAAGGGCGGAGAAGTATCTGCTAAGAAAGATGTTCAACCAAGTCCTAATGCTCAGAATCTACAGCTCGCTCATCAAGGTTCTTTCTCACAAGGTGTTAACTATACAAATTCTCAGCCTCAGGTTCAGCGTATGATGCTTCCGATGCAAGGTCCAGAATAG 534 0.5056 MADAPASPGAGGSHESGDQSPRSNVREQDRYLPIANISRIMKKGLPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLGRYREMEGDTKGSAKGGEVSAKKDVQPSPNAQNLQLAHQGSFSQGVNYTNSQPQVQRMMLPMQGPE 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5409g00035 177 MobiDBLite consensus disorder prediction 120 177 - -
Pral5409g00035 177 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Pral5409g00035 177 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Pral5409g00035 177 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Pral5409g00035 177 FunFam Nuclear transcription factor Y subunit B-3 20 144 - -
Pral5409g00035 177 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Pral5409g00035 177 SUPERFAMILY Histone-fold 28 128 IPR009072 GO:0046982
Pral5409g00035 177 MobiDBLite consensus disorder prediction 136 169 - -
Pral5409g00035 177 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 150 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pral5409g00035 177 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pral5409g00035 177 MobiDBLite consensus disorder prediction 1 30 - -
Pral5409g00035 177 Gene3D Histone, subunit A 18 156 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5409g00035 Pral-Chr5409 137842 140805 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5409g00035 1 175 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.652 6.49e-92 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pral5409g00035 CBFD_NFYB_HMF 3.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5409g00035 K08065 - zju:107432901 307.375