Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5409g00022 ATGCTGGATCTTAATCTCAACGTCGTTTCCTCTGATTCCGCGTCCAATTCTGTCGACGTGCCTGCTGAGAATCTTGTCCTACTTTCTGGTAGCCAAATGGATAGCTCTGGCAGCTTGAATTCTTCCATCATCAATGCTGATACCTCTACCAATACTTTTGATGAAGACTCTTGCTCTTATGGTGATGCCTTTGCTAACAACTTCGGAACAGTGAAGAAGAATAACATAGATGATGGCACAAGCTACAAAGCAGTTCATCTTCCTGTAGGTGAAGGTGAAGATGTCTGTGATCGGACCATCCAGCTTTTTCCGATCGCCGGTGCTGAAGAGGGTCGTGGCACTGGATTGAGAATCGGTCAGCAATTTCCAGGTTCGTCTTCAAGTAAGGGATGGCTGGATTTCCTGTGCAAGGATGTGGGTCCCGGTGGAACTCCGGAACAGAGGATGCCGCCGCCGCCGCCGCCTCCTCAAAGAGCGCAGGTCAAGAAGAGTCGGCGGGGACCGAGGTCGCGGAGCTCACAGTATCGCGGTGTTACATTTTATCGAAGAACTGGAAGATGGGAATCACATATATGGGATTGTGGGAAACAAGTGTACTTGGGCGGATTTGATACAGCACATGCTGCGGCAAGGGCATATGATCGAGCCGCAATCAAGTTCCGTGGCCTTGATGCTGATATTAATTTCAATGTTAATGACTATGAGGAGGATATAAAGCAGATGAGTAATTTCACGAAGGAAGAGTTTGTGCATATTCTGCGGCGACAGAGCACTGGCTTTTCAAGAGGAAGCTCTAAATACAGAGGAGTTACTCTGCATAAATGTGGGCGATGGGAAGCTCGCATGGGGCAGTTTCTAGGAAAGAAGGCGTATGATAAAGCAGCTATAAAATGCAATGGGAGGGAAGCAATGACGAACTTTGAGCCAAGCTCATACGATGGGGAGATAATCTCTCAGGCAGATAATGAAGATGGCCACCCAAATCTTGATCTTAGCTTGGCCATTGCTCCCCCTGCTTACTCTGATGGTTTTCAAGACCAGCATGGCTGGGCCAATCTTCCTATTGATGGGAGATTTGCGCTCGAGAACTCTGCATCAAGGTTTTTGAAGGGTCAATCGTCTCATGTTTTCCCGATTACTCCCCAGCATCCTTCTGCCTGGAATAGTGCTGATTTCTTTCCCATCACTCAGGAAAGAGCAATGGAGAAAAGAATGGAAGCTAATTCCCTGCCAAACTGGGTATTTCAATACCAAGGTCCATATGGCGAGGCAACTTTGATTCCATCCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACAAGGTTACCACCACCAGCAGCTGATAGTCAGATTCACTTTCCAAACATGACGATCCATCCTTAG 1386 0.4755 MLDLNLNVVSSDSASNSVDVPAENLVLLSGSQMDSSGSLNSSIINADTSTNTFDEDSCSYGDAFANNFGTVKKNNIDDGTSYKAVHLPVGEGEDVCDRTIQLFPIAGAEEGRGTGLRIGQQFPGSSSSKGWLDFLCKDVGPGGTPEQRMPPPPPPPQRAQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNVNDYEEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAMTNFEPSSYDGEIISQADNEDGHPNLDLSLAIAPPAYSDGFQDQHGWANLPIDGRFALENSASRFLKGQSSHVFPITPQHPSAWNSADFFPITQERAMEKRMEANSLPNWVFQYQGPYGEATLIPSFSAAASSGFPSTRLPPPAADSQIHFPNMTIHP 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5409g00022 461 MobiDBLite consensus disorder prediction 140 175 - -
Pral5409g00022 461 SUPERFAMILY DNA-binding domain 173 231 IPR016177 GO:0003677
Pral5409g00022 461 MobiDBLite consensus disorder prediction 438 461 - -
Pral5409g00022 461 Gene3D AP2/ERF domain 265 309 IPR036955 GO:0003700|GO:0006355
Pral5409g00022 461 Gene3D AP2/ERF domain 173 232 IPR036955 GO:0003700|GO:0006355
Pral5409g00022 461 ProSiteProfiles AP2/ERF domain profile. 174 230 IPR001471 GO:0003700|GO:0006355
Pral5409g00022 461 MobiDBLite consensus disorder prediction 145 159 - -
Pral5409g00022 461 SUPERFAMILY DNA-binding domain 265 309 IPR016177 GO:0003677
Pral5409g00022 461 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 138 332 - -
Pral5409g00022 461 SMART rav1_2 174 236 IPR001471 GO:0003700|GO:0006355
Pral5409g00022 461 SMART rav1_2 266 314 IPR001471 GO:0003700|GO:0006355
Pral5409g00022 461 Pfam AP2 domain 174 222 IPR001471 GO:0003700|GO:0006355
Pral5409g00022 461 FunFam AP2-like ethylene-responsive transcription factor 173 232 - -
Pral5409g00022 461 CDD AP2 174 232 IPR001471 GO:0003700|GO:0006355
Pral5409g00022 461 CDD AP2 265 310 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5409g00022 Pral-Chr5409 102142 105358 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5409g00022 1 289 AP2-EREBP Transcription Factor Family AT2G28550 60.137 7.15e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5409g00022 AP2 2.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5409g00022 K09284 - qsa:O6P43_006713 550.051