Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5409g00021 ATGCTGGATCTTAATCTCAACGTCGTTTCCTCTGATTCCGCGTCCAATTCTGTCGACGTGCCTGCTGAGAATCTTGTCCTACTTTCTGGTAGCCAAATGGATAGCTCTGGCAGCTTGAATTCTTCCATCATCAATGCTGATACCTCTACCAATACTTTTGATGAAGACTCTTGCTCTTATGGTGATGCCTTTGCTAACAACTTCGGAACAGTGAAGAAGAATAACATAGATGATGGCACAAGCTACAAAGCAGTTCATCTTCCTGTAGGTGAAGGTGAAGATGTCTGTGATCGGACCATCCAGCTTTTTCCGATCGCCGGTGCTGAAGAGGGTCGTGGCACTGGATTGAGAATCGGTCAGCAATTTCCAGGTTCGTCTTCAAGTAAGGGATGGCTGGATTTCCTGTGCAAGGATGTGGGTCCCGGTGGAACTCCGGAACAGAGGATGCCGCCGCCGCCGCCGCCTCCTCAAAGAGCGCAGGTCAAGAAGAGTCGGCGGGGACCGAGGTCGCGGAGCTCACAGTATCGCGGTGTTACATTTTATCGAAGAACTGGAAGATGGGAATCACATATATGGGATTGTGGGAAACAAGTGTACTTGGGCGGATTTGATACAGCACATGCTGCGGCAAGGGCATATGATCGAGCCGCAATCAAGTTCCGTGGCCTTGATGCTGATATTAATTTCAATGTTAATGACTATGAGGAGGATATAAAGCAGATGAGTAATTTCACGAAGGAAGAGTTTGTGCATATTCTGCGGCGACAGAGCACTGGCTTTTCAAGAGGAAGCTCTAAATACAGAGGAGTTACTCTGCATAAATGTGGGCGATGGGAAGCTCGCATGGGGCAGTTTCTAGGAAAGAAGTATATATATCTCGGGCTATTTGATAGCGAAATAGAGGCTGCAAGGGCGTATGATAAAGCAGCTATAAAATGCAATGGGAGGGAAGCAATGACGAACTTTGAGCCAAGCTCATACGATGGGGAGATAATCTCTCAGGCAGATAATGAAGATGGCCACCCAAATCTTGATCTTAGCTTGGCCATTGCTCCCCCTGCTTACTCTGATGGTTTTCAAGACCAGCATGGCTGGGCCAATCTTCCTATTGATGGGAGATTTGCGCTCGAGAACTCTGCATCAAGGTTTTTGAAGGGTCAATCGTCTCATGTTTTCCCGATTACTCCCCAGCATCCTTCTGCCTGGAATAGTGCTGATTTCTTTCCCATCACTCAGGAAAGAGCAATGGAGAAAAGAATGGAAGCTAATTCCCTGCCAAACTGGGTATTTCAATACCAAGGTCCATATGGCGAGGCAACTTTGATTCCATCCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACAAGGTTACCACCACCAGCAGCTGATAGTCAGATTCACTTTCCAAACATGACGATCCATCCTTAG 1431 0.4731 MLDLNLNVVSSDSASNSVDVPAENLVLLSGSQMDSSGSLNSSIINADTSTNTFDEDSCSYGDAFANNFGTVKKNNIDDGTSYKAVHLPVGEGEDVCDRTIQLFPIAGAEEGRGTGLRIGQQFPGSSSSKGWLDFLCKDVGPGGTPEQRMPPPPPPPQRAQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNVNDYEEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAAIKCNGREAMTNFEPSSYDGEIISQADNEDGHPNLDLSLAIAPPAYSDGFQDQHGWANLPIDGRFALENSASRFLKGQSSHVFPITPQHPSAWNSADFFPITQERAMEKRMEANSLPNWVFQYQGPYGEATLIPSFSAAASSGFPSTRLPPPAADSQIHFPNMTIHP 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5409g00021 476 MobiDBLite consensus disorder prediction 140 175 - -
Pral5409g00021 476 FunFam AP2-like ethylene-responsive transcription factor 265 325 - -
Pral5409g00021 476 ProSiteProfiles AP2/ERF domain profile. 174 230 IPR001471 GO:0003700|GO:0006355
Pral5409g00021 476 Pfam AP2 domain 265 315 IPR001471 GO:0003700|GO:0006355
Pral5409g00021 476 Pfam AP2 domain 174 222 IPR001471 GO:0003700|GO:0006355
Pral5409g00021 476 MobiDBLite consensus disorder prediction 145 159 - -
Pral5409g00021 476 FunFam AP2-like ethylene-responsive transcription factor 173 232 - -
Pral5409g00021 476 SUPERFAMILY DNA-binding domain 173 231 IPR016177 GO:0003677
Pral5409g00021 476 PRINTS Ethylene responsive element binding protein signature 267 278 IPR001471 GO:0003700|GO:0006355
Pral5409g00021 476 PRINTS Ethylene responsive element binding protein signature 305 325 IPR001471 GO:0003700|GO:0006355
Pral5409g00021 476 ProSiteProfiles AP2/ERF domain profile. 266 323 IPR001471 GO:0003700|GO:0006355
Pral5409g00021 476 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 141 347 - -
Pral5409g00021 476 Gene3D AP2/ERF domain 173 232 IPR036955 GO:0003700|GO:0006355
Pral5409g00021 476 Gene3D AP2/ERF domain 265 324 IPR036955 GO:0003700|GO:0006355
Pral5409g00021 476 CDD AP2 174 232 IPR001471 GO:0003700|GO:0006355
Pral5409g00021 476 MobiDBLite consensus disorder prediction 453 476 - -
Pral5409g00021 476 CDD AP2 265 325 IPR001471 GO:0003700|GO:0006355
Pral5409g00021 476 SUPERFAMILY DNA-binding domain 265 324 IPR016177 GO:0003677
Pral5409g00021 476 SMART rav1_2 174 236 IPR001471 GO:0003700|GO:0006355
Pral5409g00021 476 SMART rav1_2 266 329 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5409g00021 Pral-Chr5409 102142 105358 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5409g00021 161 349 AP2-EREBP Transcription Factor Family AT4G36920 81.250 1.24e-94 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Pral5409g00021 AP2 1.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5409g00021 K09284 - qsa:O6P43_006713 588.186