Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5409g00020 ATGGCCGCCGCAGTTCGCCCGCTCGTCACCGTCCAATCTCTTGAGGGTGATATGGCCACTGATGCTGCTTCAACTGTTCAAATTCCTGATGTCATGAAGGCTGCCATTCGCCCCGACATTGTCAACTTCGTTCACGCCAACATTTCTAAAAACAGTCGCCAACCCTATGCCGTCAGCAAGCGCGCTGGTCACCAGACCTCTGCCGAATCATGGGGTACTGGGCGTGCTGTGTCTCGTATCCCCCGCGTCCCTGGCGGCGGTACCCACCGTGCTGGTCAGGGTGCTTTTGGTAATATGTGTCGTGGTGGTCGTATGTTCGCTCCGACCAAGATTTGGCGCCGCTGGCACCGTAAGATCAATGTCAATCAGAAGCGTTACGCCGTCGTTTCGGCCATTGCTGCCTCGGCAATCCCATCCATTGTTATGGCTCGTGGCCACAGGATTGAGTCTGTGCCGGAAATGCCTCTTGTGGTCAGCGACTCAGCTGAGGGTGTTGAGAAGACTAAGGAAGCTATCAAGGTACTGAGGCAGATCGGCGCTTTTCCTGATGCTGAGAAAGCAAAGGACAGCCACTCCATCCGAACTGGTAAGGGGAAAATGAGAAATCGCCGATACATCTCTCGCAAGGGTCCTCTGATTGTTTATGGTACTGAAGGAGCCAGAGCTGTGAAAGCTTTTAGAAACATTCCAGGGGTCGAGGTTGCTAATGTCGAGAGGCTGAACCTTCTCAAGCTAGCTCCAGGCGGTCATCTGGGCAGGTTTGTTATTTGGACCAAGTCTGCTTTGGAGAAGCTTGATTCGATTTATGGATCATTCGACAAGCCTTCAGAGAAGAAGAAAGGGTACTTTCTTCCAAGGGCCAAGATGGTTAATAGTGACCTGGCTAGGATTATCAACTCCGACGAGATTCAATCCGTTGTGAGGCCCATCAAGAGGGAAATTAAGAGGGCACCACTCAAGAAGAACCCGCTTAAGAACCTGAATGCTTTGTTGAAACTGAACCCATATGCTAAGACTGCCAAGAGGATGGCTCTTCTTGTTGAGGCGCAACGGGTTAAAGCAAAGAAAGAGAAGCTTGATAAGAAGAGGAGTTCTCTAGCTAAGGAGGATGCTTCTGCTATTAAGGCTGCAGGAAAAGCGTGGTATCAAACCATGGTGTCGGACTCTGATTATGCAGAATTTGAGAACTTCTCCAACTGGTTGGGTGTTTCACAGTGA 1218 0.5057 MAAAVRPLVTVQSLEGDMATDAASTVQIPDVMKAAIRPDIVNFVHANISKNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSIVMARGHRIESVPEMPLVVSDSAEGVEKTKEAIKVLRQIGAFPDAEKAKDSHSIRTGKGKMRNRRYISRKGPLIVYGTEGARAVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTKSALEKLDSIYGSFDKPSEKKKGYFLPRAKMVNSDLARIINSDEIQSVVRPIKREIKRAPLKKNPLKNLNALLKLNPYAKTAKRMALLVEAQRVKAKKEKLDKKRSSLAKEDASAIKAAGKAWYQTMVSDSDYAEFENFSNWLGVSQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5409g00020 405 Coils Coil 342 369 - -
Pral5409g00020 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Pral5409g00020 405 SUPERFAMILY Ribosomal protein L4 19 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Pral5409g00020 405 PANTHER 60S RIBOSOMAL PROTEIN L4 5 398 IPR045240 -
Pral5409g00020 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Pral5409g00020 405 FunFam 60S ribosomal protein L4 3 308 - -
Pral5409g00020 405 MobiDBLite consensus disorder prediction 55 73 - -
Pral5409g00020 405 MobiDBLite consensus disorder prediction 55 94 - -
Pral5409g00020 405 Pfam Ribosomal protein L4/L1 family 27 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Pral5409g00020 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5409g00020 Pral-Chr5409 97474 99642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5409g00020 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 81.683 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5409g00020 K02930 - gmx:100779764 710.294