Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5409g00010 ATGGATGTTAAAGAAGCAGAAAGGGTAGTTGTTGCTAAACCAGTAGCTTCAAGGCCGAGTTGCCCCCCTTTGAGATCCTTCTCCGAGCTACTTGCAGGTGCCATCAATGCCTCTCCATCTCCTGAATCTTCTCAAGCCACAGTTTCAGCCATTAGACCGAAGACTGTGAGGTTCAAGCCAGCCGTGAATCGCCCGCCCCCTGCTGGGTTTATTTCTTCTGAGGCAAGCCCATCTTACAAAAGTCATAAATCAGACACTAATCAAACAGTTGTTTACAAGCCTACGGCTAAGTTTGTCTCCAAGGCCACTGTTTCTCTGCTGGCAAATATGGGAAATTATAGTACCACTCATAGCCAGCAGCTTCAACATCCCAATCAGGAGAAACCGAGGACCAATTTGAGCTCAATTAATCATCAGAATAATAACACCCCAGGCGCTGAATCAAATCTGGCAATTGAATGTTTCAAGGTGGTACAGCAGGCCCCAGAGGAGGACCAGAAAACTTCGCCATCTACTAGTAATGGTGGTGATAGACCTTGTTATGATGGGTATAACTGGAGGAAATATGGGCAGAAGCAAGTTAAAGGAAGCGAGTATCCAAGGAGTTATTACAAATGCACGCATCCTAATTGTCCAGTGAAGAAGAAGGTTGAAAGATCATTTGATGGGCAAATTGCAGAAATTGTGTATAAAGGGGAGCACAACCATTCGAAGCCTCAGCCTCCTAAGCGCAACTCAGCTGGAGCACAAGGATCAGGAATCGTGTCGGATGGATTGGGTCAAGATACTAATTATAATAAGCATCTATGGGGTAATCCTAACAGTGAGAAGAATGAAAATAGAATAGAGAACCAGAGTGAATCAGGCTATCTTGTCAAGGCTGGAGGAAGCCCTGTGAATTCATATGCTCAAAGTGAGGAATGTGAGGAAGGAAGCAAGGGAAATGAAGTGGCGGAAGATGAACCAAAGAGTAAAAGAAGGTTTTCAATAAACGCAGTTGATCTTTCACTCAGGAAAAACGAGAATCAATCCAATGAAGTAGCAGTGGCAGAGGAAGGTTTAGTGGAGCCTCAAGTGGTGGTTCAGAGTTCTACAGATTCTGAAGTACTTGGGGACGGCTTTCGCTGGAGGAAATATGGGCAGAAGGTGGTGAAGGGCAATCCACATCCCAGAAGTTATTATAGATGCACTAACATAAAGTGCAGCGCCCGTAAACATGTGGAAAAATCAATTGATGACCCAAAAGCATTTATCACTACATATGAGGGGAAACACAACCATGAGATGCCACGCAAAACTGTAGGTGCTGTGGCCTCTGACAAAGTCAAGCCATGA 1335 0.4472 MDVKEAERVVVAKPVASRPSCPPLRSFSELLAGAINASPSPESSQATVSAIRPKTVRFKPAVNRPPPAGFISSEASPSYKSHKSDTNQTVVYKPTAKFVSKATVSLLANMGNYSTTHSQQLQHPNQEKPRTNLSSINHQNNNTPGAESNLAIECFKVVQQAPEEDQKTSPSTSNGGDRPCYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGQIAEIVYKGEHNHSKPQPPKRNSAGAQGSGIVSDGLGQDTNYNKHLWGNPNSEKNENRIENQSESGYLVKAGGSPVNSYAQSEECEEGSKGNEVAEDEPKSKRRFSINAVDLSLRKNENQSNEVAVAEEGLVEPQVVVQSSTDSEVLGDGFRWRKYGQKVVKGNPHPRSYYRCTNIKCSARKHVEKSIDDPKAFITTYEGKHNHEMPRKTVGAVASDKVKP 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5409g00010 444 MobiDBLite consensus disorder prediction 241 291 - -
Pral5409g00010 444 MobiDBLite consensus disorder prediction 116 146 - -
Pral5409g00010 444 Gene3D WRKY domain 167 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pral5409g00010 444 Gene3D WRKY domain 355 431 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pral5409g00010 444 ProSiteProfiles WRKY domain profile. 182 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral5409g00010 444 MobiDBLite consensus disorder prediction 162 178 - -
Pral5409g00010 444 MobiDBLite consensus disorder prediction 37 51 - -
Pral5409g00010 444 MobiDBLite consensus disorder prediction 37 87 - -
Pral5409g00010 444 SUPERFAMILY WRKY DNA-binding domain 364 430 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pral5409g00010 444 SUPERFAMILY WRKY DNA-binding domain 179 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pral5409g00010 444 FunFam WRKY transcription factor 358 431 - -
Pral5409g00010 444 Pfam WRKY DNA -binding domain 372 428 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral5409g00010 444 Pfam WRKY DNA -binding domain 182 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral5409g00010 444 MobiDBLite consensus disorder prediction 309 325 - -
Pral5409g00010 444 ProSiteProfiles WRKY domain profile. 365 430 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral5409g00010 444 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 97 432 IPR044810 GO:0003700
Pral5409g00010 444 SMART WRKY_cls 180 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral5409g00010 444 SMART WRKY_cls 370 429 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral5409g00010 444 MobiDBLite consensus disorder prediction 232 325 - -
Pral5409g00010 444 MobiDBLite consensus disorder prediction 160 184 - -
Pral5409g00010 444 FunFam WRKY transcription factor 166 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5409g00010 Pral-Chr5409 43863 47882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5409g00010 362 444 WRKY Transcription Factor Family AT2G37260 43.182 4.48e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pral5409g00010 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5409g00010 - - gmx:100794069 546.584