Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5409g00001 ATGATGGAAGAAACAGCAACCATATTGGCTGCAATCTCCGCCCTCCCTCCTTCTCACCTCTCCGATCTCACCCACTCCATCGCCTCCGTCGTCCACCGCCACCATCTCCGTCTCGCCTCCGTCTCTCTTTCCCAACCCCTCTTCTCCCTCGCCCTTCACTACCTCCACTCTCTCTCTTTCCCGAAGTCCCTCCTCATTGCCCGCCACCTCCTGTCTTCCCTCCCAATCCTCACGCGCCACTTCGAACCGCCGCCGCCTCCATTATCTACTGTCATGAGACAGCGTGACCTCGACGCTGTCCTGCTGCTCCTCTTATTCTGTGATGCCCACCAGAACCACCCGCAAGCCCTCGAAGCGTCAGTTTGCGATTGGCGCAGAAATCTGAGCAAGCTCTTCTCTGATAAAATGTTGGGGATATCTCTACTCCTATCGGGATGCGGTGCCACGATTTTGATTCCCTATATTGAGATGGTGACACGGTGTCGGAGACTGGTGGGTGCAATGGGCTGCGACGGAGGAAAGGGTGGCGGGGAAGTGGCGGCGTCGAGGACGGCGGTGGTGGCGCTGCCGAGAGTGGCGGTGAGGGCGGGAGGAAGAGAGTGCGTGATATGCAAAGAGGAGATGAGCGTGGGGAGGGATGTGTGCGAACTGCCATGTCAGCATGTGTTTCACTGGAATTGCATATTACCGTGGCTAAGTAAAAGGAATACGTGTCCATGCTGCCGGTTCCGCATGCCGTCGGATGATGTGCTGGGAGAGATCCAACGGCTGTGGGAGGTCTTGGTCAAAACGTGTGGGGCAGAGTGGGGCGATTAG 816 0.5748 MMEETATILAAISALPPSHLSDLTHSIASVVHRHHLRLASVSLSQPLFSLALHYLHSLSFPXKSLLIARHLLSSLPILTRHFEPPPPPLSTVMRQRDLDAVLLLLLFCDAHQNHPQALEASVCDWRRNLSKLFSDKMLGISLLLSGCGATILIPYIEMVTRCRRLVGAMGCDGGKGGGEVAASRTAVVALPRVAVRAGGRECVICKEEMSVGRDVCELPCQHVFHWNCILPWLSKRNTCPCCRFRMPSDDVLGEIQRLWEVLVKTCGAEWGD 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5409g00001 272 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Pral5409g00001 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 146 247 - -
Pral5409g00001 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 249 IPR013083 -
Pral5409g00001 272 SMART ring_2 202 242 IPR001841 -
Pral5409g00001 272 Pfam Ring finger domain 201 243 IPR001841 -
Pral5409g00001 272 SUPERFAMILY RING/U-box 199 248 - -
Pral5409g00001 272 CDD RING-H2_PA-TM-RING 201 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5409g00001 Pral-Chr5409 3218 4757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5409g00001 3 265 C3H Transcription Factor Family AT5G02750 50.545 1.12e-82 248