Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5408g00016 ATGAGTCATATCTCAGAGAGAGAAGGCTTTAATAAGTACAACTTCAGCAACACAGATTCTCATCATCATCAAGACGGGGGAATCATCAAGGAGCAAGATCGCTTGCTTCCAATAGCTAATGTGGGGAGGATTATGAAGCAAATTCTGCCTCCTAACGCCAAAATCTCCAAAGAAGCCAAGGAAACCATGCAAGAATGTGTTTCTGAGTTCATAAGCTTCGTCACTGGGGAGGCCTCTGACAAGTGTCACAAGGAGAAGCGCAAGACAGTGAATGGCGACGATATTTGCTGGGCCCTCGCTACTCTAGGGTTTGACGACTACGCCGAGCCACTCAAGAGGTATTTGCTTAAGTTTAGGGAATCAGAGGGCGAGAGATCTAACCAAAATAAGGCTAACAATTTTCATACTGATGAAATTAATGTTGCTGATCAAGCTTGTGAATATGGAGGTGAGCCTCCCAGGAGATTCCCCACTACTAGTGCTTCCTCTGCTACGGGTACCTCATTGATGAGGTTCAATGGCACCTCTCACTCACACCAGTTTCCAAACTTCTAG 555 0.4559 MSHISEREGFNKYNFSNTDSHHHQDGGIIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLLKFRESEGERSNQNKANNFHTDEINVADQACEYGGEPPRRFPTTSASSATGTSLMRFNGTSHSHQFPNF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5408g00016 184 ProSitePatterns NF-YB/HAP3 subunit signature. 66 82 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pral5408g00016 184 FunFam Nuclear transcription factor Y subunit B-3 24 147 - -
Pral5408g00016 184 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
Pral5408g00016 184 MobiDBLite consensus disorder prediction 148 184 - -
Pral5408g00016 184 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 136 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pral5408g00016 184 MobiDBLite consensus disorder prediction 7 22 - -
Pral5408g00016 184 SUPERFAMILY Histone-fold 32 143 IPR009072 GO:0046982
Pral5408g00016 184 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Pral5408g00016 184 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Pral5408g00016 184 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Pral5408g00016 184 MobiDBLite consensus disorder prediction 156 184 - -
Pral5408g00016 184 MobiDBLite consensus disorder prediction 1 25 - -
Pral5408g00016 184 Gene3D Histone, subunit A 25 147 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5408g00016 Pral-Chr5408 71521 72342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5408g00016 10 127 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.669 1.14e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pral5408g00016 CBFD_NFYB_HMF 1.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5408g00016 K08065 - qsu:112003935 224.942