Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5395g00025 ATGTTAGATCTTAATCTTAATGCGGATTCGACCGATTTGACTCAGAACCATGACTCAGTCATGTTCTTCGACAAATTTCCTGAAGCTTCGGTGAATCAAATGGCGGAATCGGGAACCTCTAATTCATCTGTTGTCAATGCCGACGGGTCTAGTACTGGAGGAGGCGATGATGACTCTTGTTCTACACGGGCTGGCGACGTTGTCACCTTCAATTTCGATATCCTTAAGGTGGAAGGCGGAAACGAGGTCGCCACCAGGGAGTTGTTTCCGGTTGGTGGAGCAAAAGGAGTGGATAGCGACTCTGGGAATTGGCAGGGGCAGTCTTCATCACCCTTTCCATCAAATAAGAGCCGGATGGATCTCTCATTCGATAGTCAAGGTGGCAGCACGGAGGCAAAGATGATTCAACTTCAGCAACAACCTCAGCCGCAGGTGAAGAAGAGCAGGAGAGGTCCAAGGTCTCGGAGCTCCCAGTACAGAGGAGTCACCTTCTATAGGAGGACCGGAAGATGGGAATCACATATCTGGGACTGTGGGAAACAAGTTTATTTAGGTGGTTTTGACACTGCACATGCCGCTGCTAGAGCCTACGATCGAGCTGCTATTAAATTCAGGGGAGTTGAAGCTGATATCAATTTCAACCTCAGTGATTATGAGGAGGATCTTAAACAGATGAAGAATCTCACCAAGGAGGAGTTTGTTCACATTCTTCGCCGCCAGAGTACTGGTTTCTCTAGGGGTAGTTCAAAATACCGGGGGGTTACACTGCACAAATGTGGACGCTGGGAAGCTCGGATGGGACAATTTCTTGGCAAAAAGGCTTACGATAAAGCAGCCATTAAGTGCAATGGGAGGGAGGCAGTAACTAACTTTGAGCCAAGTACTTATGAAGGGGAGTTAAATCCTGAAGCGATCAATGAAGGTGTCCGTCACAATCTTGACCTCAACTTAGGCATAGCAACCCCAGGCAAAGGTCCCAATGAAAGCAGGGGCAATCCTGAGCTCCAGTCATTTCCTCACGATATGCATGCCAGAACAAGTTCTAGGATGGAGACTAACACTGTCTCAGTAATTGGTGATCAAGCTATGCAAAAGCTTGTTGTGACTGGAGATCGCCCTTCTGTATGGAATGGCATATATTCAAATTTCTTTCCTAGTGAGGAAAGAGGTGAGAGAATGATCACAAGTCCTGCGCAAGGACTCACCAACTGGACGTGGCGAAGGCATGGCCAGCCAAGTGGTAGCCCAGTTCCACAGTTCTCTACTGCAGCATCATCAGGATTCTCCCTTTCATCCACTGCTATCTTCCCGGCGAAACCTATGAACTCCCTTCCCTTGAGTCTCTCTTTTTCTTCTCCATCCACTTCGGCTGCCCCCACCGCACCTCAATATTACTACCACTTGAAGCAACCCCGTTCACTGCCTTAG 1428 0.4832 MLDLNLNADSTDLTQNHDSVMFFDKFPEASVNQMAESGTSNSSVVNADGSSTGGGDDDSCSTRAGDVVTFNFDILKVEGGNEVATRELFPVGGAKGVDSDSGNWQGQSSSPFPSNKSRMDLSFDSQGGSTEAKMIQLQQQPQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNLSDYEEDLKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSTYEGELNPEAINEGVRHNLDLNLGIATPGKGPNESRGNPELQSFPHDMHARTSSRMETNTVSVIGDQAMQKLVVTGDRPSVWNGIYSNFFPSEERGERMITSPAQGLTNWTWRRHGQPSGSPVPQFSTAASSGFSLSSTAIFPAKPMNSLPLSLSFSSPSTSAAPTAPQYYYHLKQPRSLP 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5395g00025 475 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Pral5395g00025 475 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Pral5395g00025 475 MobiDBLite consensus disorder prediction 100 147 - -
Pral5395g00025 475 Gene3D AP2/ERF domain 249 293 IPR036955 GO:0003700|GO:0006355
Pral5395g00025 475 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700|GO:0006355
Pral5395g00025 475 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Pral5395g00025 475 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 117 381 - -
Pral5395g00025 475 SMART rav1_2 250 298 IPR001471 GO:0003700|GO:0006355
Pral5395g00025 475 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Pral5395g00025 475 MobiDBLite consensus disorder prediction 33 58 - -
Pral5395g00025 475 CDD AP2 158 216 IPR001471 GO:0003700|GO:0006355
Pral5395g00025 475 MobiDBLite consensus disorder prediction 96 159 - -
Pral5395g00025 475 FunFam AP2-like ethylene-responsive transcription factor 157 216 - -
Pral5395g00025 475 MobiDBLite consensus disorder prediction 33 60 - -
Pral5395g00025 475 CDD AP2 249 294 IPR001471 GO:0003700|GO:0006355
Pral5395g00025 475 SUPERFAMILY DNA-binding domain 249 293 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5395g00025 Pral-Chr5395 178938 183339 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5395g00025 1 471 AP2-EREBP Transcription Factor Family AT5G60120 46.092 7.77e-104 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5395g00025 AP2 6.8e-10 CL0081