Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5395g00024 ATGTTAGATCTTAATCTTAATGCGGATTCGACCGATTTGACTCAGAACCATGACTCAGTCATGTTCTTCGACAAATTTCCTGAAGCTTCGGTGAATCAAATGGCGGAATCGGGAACCTCTAATTCATCTGTTGTCAATGCCGACGGGTCTAGTACTGGAGGAGGCGATGATGACTCTTGTTCTACACGGGCTGGCGACGTTGTCACCTTCAATTTCGATATCCTTAAGGTGGAAGGCGGAAACGAGGTCGCCACCAGGGAGTTGTTTCCGGTTGGTGGAGCAAAAGGAGTGGATAGCGACTCTGGGAATTGGCAGGGGCAGTCTTCATCACCCTTTCCATCAAATAAGAGCCGGATGGATCTCTCATTCGATAGTCAAGGTGGCAGCACGGAGGCAAAGATGATTCAACTTCAGCAACAACCTCAGCCGCAGGTGAAGAAGAGCAGGAGAGGTCCAAGGTCTCGGAGCTCCCAGTACAGAGGAGTCACCTTCTATAGGAGGACCGGAAGATGGGAATCACATATCTGGGACTGTGGGAAACAAGTTTATTTAGGTGGTTTTGACACTGCACATGCCGCTGCTAGAGCCTACGATCGAGCTGCTATTAAATTCAGGGGAGTTGAAGCTGATATCAATTTCAACCTCAGTGATTATGAGGAGGATCTTAAACAGATGAAGAATCTCACCAAGGAGGAGTTTGTTCACATTCTTCGCCGCCAGAGTACTGGTTTCTCTAGGGGTAGTTCAAAATACCGGGGGGTTACACTGCACAAATGTGGACGCTGGGAAGCTCGGATGGGACAATTTCTTGGCAAAAAGTATATATACCTTGGGCTGTTCGACAGCGAAGTAGAGGAAATCAGGGCTTACGATAAAGCAGCCATTAAGTGCAATGGGAGGGAGGCAGTAACTAACTTTGAGCCAAGTACTTATGAAGGGGAGTTAAATCCTGAAGCGATCAATGAAGGTGTCCGTCACAATCTTGACCTCAACTTAGGCATAGCAACCCCAGGCAAAGGTCCCAATGAAAGCAGGGGCAATCCTGAGCTCCAGTCATTTCCTCACGATATGCATGCCAGAACAAGTTCTAGGATGGAGACTAACACTGTCTCAGTAATTGGTGATCAAGCTATGCAAAAGCTTGTTGTGACTGGAGATCGCCCTTCTGTATGGAATGGCATATATTCAAATTTCTTTCCTAGTGAGGAAAGAGGTGAGAGAATGATCACAAGTCCTGCGCAAGGACTCACCAACTGGACGTGGCGAAGGCATGGCCAGCCAAGTGGTAGCCCAGTTCCACAGTTCTCTACTGCAGCATCATCAGGATTCTCCCTTTCATCCACTGCTATCTTCCCGGCGAAACCTATGAACTCCCTTCCCTTGAGTCTCTCTTTTTCTTCTCCATCCACTTCGGCTGCCCCCACCGCACCTCAATATTACTACCACTTGAAGCAACCCCGTTCACTGCCTTAG 1473 0.482 MLDLNLNADSTDLTQNHDSVMFFDKFPEASVNQMAESGTSNSSVVNADGSSTGGGDDDSCSTRAGDVVTFNFDILKVEGGNEVATRELFPVGGAKGVDSDSGNWQGQSSSPFPSNKSRMDLSFDSQGGSTEAKMIQLQQQPQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNLSDYEEDLKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEEIRAYDKAAIKCNGREAVTNFEPSTYEGELNPEAINEGVRHNLDLNLGIATPGKGPNESRGNPELQSFPHDMHARTSSRMETNTVSVIGDQAMQKLVVTGDRPSVWNGIYSNFFPSEERGERMITSPAQGLTNWTWRRHGQPSGSPVPQFSTAASSGFSLSSTAIFPAKPMNSLPLSLSFSSPSTSAAPTAPQYYYHLKQPRSLP 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5395g00024 490 Pfam AP2 domain 249 299 IPR001471 GO:0003700|GO:0006355
Pral5395g00024 490 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Pral5395g00024 490 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Pral5395g00024 490 SMART rav1_2 250 313 IPR001471 GO:0003700|GO:0006355
Pral5395g00024 490 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Pral5395g00024 490 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Pral5395g00024 490 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Pral5395g00024 490 MobiDBLite consensus disorder prediction 100 147 - -
Pral5395g00024 490 Gene3D AP2/ERF domain 249 308 IPR036955 GO:0003700|GO:0006355
Pral5395g00024 490 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700|GO:0006355
Pral5395g00024 490 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Pral5395g00024 490 FunFam AP2-like ethylene-responsive transcription factor 157 216 - -
Pral5395g00024 490 SUPERFAMILY DNA-binding domain 249 308 IPR016177 GO:0003677
Pral5395g00024 490 MobiDBLite consensus disorder prediction 33 58 - -
Pral5395g00024 490 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 117 396 - -
Pral5395g00024 490 ProSiteProfiles AP2/ERF domain profile. 250 307 IPR001471 GO:0003700|GO:0006355
Pral5395g00024 490 CDD AP2 158 216 IPR001471 GO:0003700|GO:0006355
Pral5395g00024 490 MobiDBLite consensus disorder prediction 96 159 - -
Pral5395g00024 490 CDD AP2 249 309 IPR001471 GO:0003700|GO:0006355
Pral5395g00024 490 MobiDBLite consensus disorder prediction 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5395g00024 Pral-Chr5395 178938 183339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5395g00024 73 378 AP2-EREBP Transcription Factor Family AT4G36920 59.105 1.10e-99 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pral5395g00024 AP2 2.1e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5395g00024 K09284 - qsa:O6P43_000276 627.091