LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5393g00061	ATGGGTACAGACTTTGTGAAGTTTGATGTTGATTTGGGTGAAAAGTTGGCCATTTTTTCAGTTGATAGTTCGAAGAAAACTGATCCAAAGGCGCAGGCCTTGAAAACTGCTAAAGCAGTCAAGTCAGGCCCTGCCTTCAAAAAGAAGGCCAAGAAAATCAGAACCTCTGTTACATTCCATCGGCCAAAGACTTTGAAAAAGGCTAGGAATCCCAAGTACCCTCGTATTAGTGCTCCACCAAGGAATAAACTCGATCATTATCAAATTTTGAAGTACCCTCTCACTACTGAGTCTGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACCTACGTGCTGACAAGAAGAAGATAAAGGATGCCGTGAAGAAAATGTATGACATTCAAGCCAAGAAAGTAAACACCTTGATCAGGCCCGATGGCACCAAGAAGGCATATGTTAGGCTGACTCCTGATTATGATGCATTGGACGTGGCAAACAAAATTGGGATTATCTAA	510	0.4137	MGTDFVKFDVDLGEKLAIFSVDSSKKTDPKAQALKTAKAVKSGPAFKKKAKKIRTSVTFHRPKTLKKARNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII	169

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5393g00061	169	Hamap	50S ribosomal protein L23 [rplW].	89	169	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Pral5393g00061	169	ProSitePatterns	Ribosomal protein L23 signature.	147	162	IPR001014	GO:0019843
	Pral5393g00061	169	Gene3D	-	50	169	IPR012677	-
	Pral5393g00061	169	Pfam	Ribosomal protein L23	89	151	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Pral5393g00061	169	NCBIfam	50S ribosomal protein L23	93	169	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Pral5393g00061	169	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	86	162	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Pral5393g00061	169	Pfam	Ribosomal protein L23, N-terminal domain	30	79	IPR005633	-
	Pral5393g00061	169	PANTHER	60S RIBOSOMAL PROTEIN L23A	25	169	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Pral5393g00061	169	FunFam	60S ribosomal protein L23a	48	169	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5393g00061	Pral-Chr5393	255649	257434	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5393g00061	42	169	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	91.406	1.68e-68	203

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5393g00061	K02893		-	qsa:O6P43_031159	273.092