Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5393g00060 ATGTCATCCAATTCTGGCACGCCTGAGGATGATTCTTTCTTTTGGGAAGCACACAAGGTATCCTCAGTTGTGATATTCTCTGCCATCTTCATCATACTAACTTTCTACAGCATATTTCATTGCCTCTTCTATAGAACCGCTCCCACTAGTTCCTCTAGAAACCGCACTTCAAGTGGGGATTTGGACGAGCCCGACCCTGATGATCACTATTCTAGACAGATTCGAGGTCGTGGGTTAGAGTTGGGGGTCATATCGGCTCTTCCGATGTCTCAGTTTAAGAAGAACGAGGGAACCAACAGAGAGTGCGCGATATGCTTGGGAGAGTTTGAAGAAGAAGAATGGGTTAAGAGACTTCCTAGCTGCGCCCACGTCTTTCATGTTTCCTGCATAGCCACGTGGCTTCGGTCTCACTCAAGTTGTCCTCTCTGCAGATCTAATGTCAATTATGATCATCTCGCTCTTAACTTGGACTCCCCTGTTTCTTACTACACATCGCTACGCGAGACGCTAAACAGAGAAGGCTCTTCGGTGCCAAGGGCTTCACAGTTAGGCCGTCAGGCATCAACAGTACAACCCATCTCATGTTCCAATTGA 594 0.4731 MSSNSGTPEDDSFFWEAHKVSSVVIFSAIFIILTFYSIFHCLFYRTAPTSSSRNRTSSGDLDEPDPDDHYSRQIRGRGLELGVISALPMSQFKKNEGTNRECAICLGEFEEEEWVKRLPSCAHVFHVSCIATWLRSHSSCPLCRSNVNYDHLALNLDSPVSYYTSLRETLNREGSSVPRASQLGRQASTVQPISCSN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5393g00060 197 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Pral5393g00060 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 152 IPR013083 -
Pral5393g00060 197 SMART FANCL_C_2 98 152 - -
Pral5393g00060 197 SUPERFAMILY RING/U-box 93 150 - -
Pral5393g00060 197 MobiDBLite consensus disorder prediction 173 197 - -
Pral5393g00060 197 Pfam Ring finger domain 101 144 IPR001841 -
Pral5393g00060 197 MobiDBLite consensus disorder prediction 49 69 - -
Pral5393g00060 197 CDD RING-H2_EL5-like 101 144 - -
Pral5393g00060 197 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 155 - -
Pral5393g00060 197 SMART ring_2 102 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5393g00060 Pral-Chr5393 254534 255127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5393g00060 60 147 C3H Transcription Factor Family AT4G33565 47.826 3.70e-22 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5393g00060 - - pcin:129313194 211.846