Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5393g00037 ATGTCTGCAGCTCTGGATATGACTCTTGATGATATCATCAAGAAAAACAAGAAATCTGGATCTGGTAACTCCAGAGGTCGTGGCCGAGGATCTGGCCCCGGTCCATCTCGCCGCTTCCCCAATCGTGCCGCCAATCGTGCAGCACCTTATGCAACTGCAAAGGCACCAGAGGCGGCTTGGCAACATGATATGTTTGCGGATCAGGCTGTGGCACCGCACGCAGCTCAAGGTGGTCGAGCGTCTGCCATAGAAACGGGGACTAAGCTCTACATATCTAATTTGGATTACGGTGTTTCTAACGAGGATATTAAGGAGTTGTTTTCTGAAGTTGGTGACCTAAAGCGATATGCAATCCATTACGACAGGAGTGGCAGGTCAAAGGGTACAGCAGAAGTAGTCTTCTCACGACGAGTTGATGCTGTAGCTGCAGTGAAGAGATACAACAATGTTCAACTTGATGGTAAACCGATGAAGATAGAGATCGTGGGGACAAACATTGCTACACCTGCTGCAGCTCCTGCTGCAAATGGAGCTGTTGGAGATTCAAATGGTGTTCCTAGAATTGGACAAGGTAGAGGTGGGGCGTTTGGAAGGCCACGTGGTGGAGGTAGAGGACGTGGCTTTCAGAGTGGCTTTCAGAGGGGCCGAGGACGCGGAAGAGGTCGTGGAGAGAAGGTGTCTGCAGATGATCTTGACGCTGAATTGGAGAAATATCATTCGGAGGCAATGCAAATAAACTGA 741 0.498 MSAALDMTLDDIIKKNKKSGSGNSRGRGRGSGPGPSRRFPNRAANRAAPYATAKAPEAAWQHDMFADQAVAPHAAQGGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYAIHYDRSGRSKGTAEVVFSRRVDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPAAAPAANGAVGDSNGVPRIGQGRGGAFGRPRGGGRGRGFQSGFQRGRGRGRGRGEKVSADDLDAELEKYHSEAMQIN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5393g00037 246 Gene3D - 66 229 IPR012677 -
Pral5393g00037 246 FunFam THO complex subunit 4 80 228 - -
Pral5393g00037 246 CDD RRM_THOC4 87 161 - -
Pral5393g00037 246 Coils Coil 228 246 - -
Pral5393g00037 246 SUPERFAMILY RNA-binding domain, RBD 23 161 IPR035979 GO:0003676
Pral5393g00037 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Pral5393g00037 246 MobiDBLite consensus disorder prediction 1 53 - -
Pral5393g00037 246 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 244 - -
Pral5393g00037 246 Pfam C-terminal duplication domain of Friend of PRMT1 187 241 IPR025715 -
Pral5393g00037 246 SMART rrm1_1 88 160 IPR000504 GO:0003723
Pral5393g00037 246 MobiDBLite consensus disorder prediction 217 239 - -
Pral5393g00037 246 SMART FoP_duplication_2 175 246 IPR025715 -
Pral5393g00037 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Pral5393g00037 246 MobiDBLite consensus disorder prediction 177 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5393g00037 Pral-Chr5393 185105 188872 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5393g00037 86 161 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 4.11e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5393g00037 K12881 - qsa:O6P43_028263 292.352