Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5393g00023 ATGGTTTTCTCTTCTATTCCGGTCTATTTAGATCCTCCCAATTGGCAGCCGCAACAAAATCATCAGCAATCAAATGGAACTGAAAGCGCTCAGCTGCTTCCTCATGCTGGAGGTTGCGGTGCAGGTTCAGTCCGGCCTGGTTCGATGGCTGACCGGGCCCGGCTAGCGAAGCTACCGCCTCCCGAGCCAGCCCTAAAGTGTCCCCGTTGCGATTCCACCAACACAAAATTTTGTTACTTCAACAATTACAGCCTGTCCCAACCTCGTCACTTCTGCAAGACATGTCGGCGATACTGGACAAGAGGCGGCGCTCTCAGGAACGTTCCGGTCGGAGGCGGATGCAGAAGAAACAAGAAGAGCAAGAGGAGCCGCTCCAAGTCGCCGGCAGCTGCACCCACCACCGCTGACAACAAGCAGACTCTTCTCCCCAACGCCGCCACCACCACCGAGCTGATCGGTCAGTTGCAGCAACCTTCCAACTTGCCACTCATGGCTTCTTTACAAAATATGGGCGGCCGTTACGGCTTAGGGAACATGGGCCTGAGCTTGCGCGATATTTTAGCCCAGACTGAGCCCATAGGCTTTCAAATGGGAGGAGGGGACAACCAGTGGCGCTCACTGCAATTCCCTAATTGCTTGAATGGGTTCGAGTCAGATAATTCAGTTGATCCTTCTTACCAGTTTCAAAGTGAGGGCATGGCAGTAGTACAGAATGGACTGACTGGAGATTCAAGTTCTAGGGTTACAACTCAGCTGCCGCCTATTAAATTGGATGGTAATGGAGCCCTAAATTTGTCAAGACCGCCCATAGGTAATAATAATGGTAATAATCAGTACTATTCATGGACTGATTTATCGGGACTTCCATCTTCTTCCACTAGCCACCTCTTGTAA 894 0.5112 MVFSSIPVYLDPPNWQPQQNHQQSNGTESAQLLPHAGGCGAGSVRPGSMADRARLAKLPPPEPALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSKRSRSKSPAAAPTTADNKQTLLPNAATTTELIGQLQQPSNLPLMASLQNMGGRYGLGNMGLSLRDILAQTEPIGFQMGGGDNQWRSLQFPNCLNGFESDNSVDPSYQFQSEGMAVVQNGLTGDSSSRVTTQLPPIKLDGNGALNLSRPPIGNNNGNNQYYSWTDLSGLPSSSTSHLL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5393g00023 297 MobiDBLite consensus disorder prediction 110 139 - -
Pral5393g00023 297 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 199 IPR045174 GO:0003700|GO:0006355
Pral5393g00023 297 Pfam Dof domain, zinc finger 64 119 IPR003851 GO:0003677|GO:0006355
Pral5393g00023 297 ProSitePatterns Zinc finger Dof-type signature. 67 103 IPR003851 GO:0003677|GO:0006355
Pral5393g00023 297 ProSiteProfiles Zinc finger Dof-type profile. 65 119 IPR003851 GO:0003677|GO:0006355
Pral5393g00023 297 MobiDBLite consensus disorder prediction 12 31 - -
Pral5393g00023 297 MobiDBLite consensus disorder prediction 12 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5393g00023 Pral-Chr5393 103464 105000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5393g00023 34 296 C2C2-Dof Transcription Factor Family AT3G55370 41.581 2.36e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral5393g00023 zf-Dof 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5393g00023 - - pcin:129314695 478.404