Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5393g00022 ATGCTGGACACTGCCATGGAGGAAGACAAAGCAGCTACAGTGCAGCGCTCGATGGACTCGATAAATGAGATAGCTGCGATCTCGGACTACAGGAGCACCGTCAAGAAGCAGTACTGCAATTTGGCAAGAAGGTTGAAGTTGTTGATTCCAATGTTCGAAGAGATTAGGGACAGCAAAGAGGCGGCACCCAAAGAGACTTTGAAAGCTTTGATTTCCTTCAAGGGAGCTTTAGAATCGGCCAAGCAACTTCTCAGATTCGGGAGCGAAGGCAGCAAGATTTATATGGTCTTGGAGAGGGAGCAAATTATGAAACAATACCACGAGGTGACAGCTCAATTAGAACAAGCCTTGAGTGGAATTTCATATGATAAACTTGACATATCAGATGAAGTTAAAGAGCAAGTTGAGCTGGTTCTGGCACAATTTAGAAGAGCCAAAGGAAGGGTTGATGCACCTGATGATGAGTTGTACGAGGATATCTTGTCACTTTATGACAAGAGCAGTGATGCAGCAACAGATGCAGCTGTTCTGAGGAGATTGGCTGAAAAATTGCAATTGATGGGAATATCTGATCTCACACAAGAGTCACTAGCTTTGCATGAGATGGTGGCAGCAAGCGGTGGGGATCCGGGGGCAAGTATTGAGAAGATGTCGATGTTATTGAAAAAAATAAAGGATTATGTACAAACAGAGAATCTAGTCATGGATGATACTGAAGGTGGAAAAGGTCTTTCTCCTTGCAGCAGCAGCCATGGGATGAGTGAAAAGGGTCATCAAGCCCCTATTATACCTGATGATTTCCGATGTCCAATTTCCCTAGAATTGATGAAGGATCCTGTTATTGTTTCGACAGGACAGACTTATGAGCGTTCTTGTATTGAGAAGTGGTTGGAAGCGGGGCATGGCACCTGTCCAAAAACACAGCAAACACTTACTAGCTATGTTCTCACACCCAATTATGTCTTACGAAGCCTCATAGCACAATGGTGCGAAGCCAATGGCATGGAACCTCCAAAACGACCCAGCAGTTCCCGGCCTAGTAAGTCAGCATCTGCCTGCTCACCAGCTGAGCGTAATAAGATTGAAAATCTTCTTCGAAAGCTTACTTCTGGTAATCCTGAAGACCAGAGAACGGCAGCAGGTGAGATCCGTCTTTTAGCAAAACGCAATGCAGATAACCGTGTGGCCATTGCTGAAGCTGGTGCAATACCGCTCCTTGTAGACCTTCTCTCTATACCCGACTCCCGAACTCAAGAGCATGCCGTAACAGCTCTTTTAAATCTTTCCATTTGTGAGAATAACAAAGGAAGTATCATATCTTCTGGGGCAGTTCCTGGCATAGTTCATGTGCTCAGGAAGGGCAGCATGGAAGCTCGGGAAAATGCAGCAGCCACGCTTTTCAGCCTCTCAGTCGTTGATGAAAATAAGGTTACTATCGGATCATCAGGAGCCATCCCACCGCTAGTGACACTGCTGAGCGAGGGTACCCAAAGGGGTAAAAAAGATGCTGCAACGGCACTCTTCAACTTGTGCATATACCAAGGTAACAAGGGAAAAGCAGTGAGGGCAGGTGTGGTTCCTACACTAATGCGACTGCTGACAGAACCCGGTGGGGGAATGGTTGATGAAGCATTGGCCATATTGGCAATATTGGCTAGTCATCCGGAAGGGAAGGTTGCGATTGGTGCTGCGGAGGCTGTACCAGTTTTGGTAGGAGTCATTGGAAATGGATCCCCAAGAAACAAAGAAAACGCAGCTGCCGTTTTGGTACACCTTTGTTCCGGCGATCAGCAATATCTAGCGCAAGCTCAAGATCTCGGGGTGATGGCTCCATTGGTGGATCTGGCTCAAAATGGTACAGACAGGGGTAAAAGAAAGGCTGCACAATTGCTCGAGCGAATGAGCAGATTCCTTGAGCAGCAGCAGCAGCTGCAGCAGCAGGAAGTTCAAACACAGACTGAAGTGCAAGTTCAGAATCAGGATATACAGCCCCCTTCTGGTACTAATCTCATTGATAGTTGA 2022 0.4669 MLDTAMEEDKAATVQRSMDSINEIAAISDYRSTVKKQYCNLARRLKLLIPMFEEIRDSKEAAPKETLKALISFKGALESAKQLLRFGSEGSKIYMVLEREQIMKQYHEVTAQLEQALSGISYDKLDISDEVKEQVELVLAQFRRAKGRVDAPDDELYEDILSLYDKSSDAATDAAVLRRLAEKLQLMGISDLTQESLALHEMVAASGGDPGASIEKMSMLLKKIKDYVQTENLVMDDTEGGKGLSPCSSSHGMSEKGHQAPIIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLTSYVLTPNYVLRSLIAQWCEANGMEPPKRPSSSRPSKSASACSPAERNKIENLLRKLTSGNPEDQRTAAGEIRLLAKRNADNRVAIAEAGAIPLLVDLLSIPDSRTQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLRKGSMEARENAAATLFSLSVVDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGGGMVDEALAILAILASHPEGKVAIGAAEAVPVLVGVIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQDLGVMAPLVDLAQNGTDRGKRKAAQLLERMSRFLEQQQQLQQQEVQTQTEVQVQNQDIQPPSGTNLIDS 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5393g00022 673 FunFam RING-type E3 ubiquitin transferase 10 123 - -
Pral5393g00022 673 MobiDBLite consensus disorder prediction 238 259 - -
Pral5393g00022 673 SUPERFAMILY RING/U-box 263 339 - -
Pral5393g00022 673 SMART arm_5 596 636 IPR000225 GO:0005515
Pral5393g00022 673 SMART arm_5 390 430 IPR000225 GO:0005515
Pral5393g00022 673 SMART arm_5 431 471 IPR000225 GO:0005515
Pral5393g00022 673 SMART arm_5 472 512 IPR000225 GO:0005515
Pral5393g00022 673 SMART arm_5 513 553 IPR000225 GO:0005515
Pral5393g00022 673 SMART arm_5 554 594 IPR000225 GO:0005515
Pral5393g00022 673 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 401 443 IPR000225 GO:0005515
Pral5393g00022 673 CDD RING-Ubox_PUB 264 316 IPR045210 -
Pral5393g00022 673 Gene3D - 10 123 IPR036537 GO:0007166
Pral5393g00022 673 MobiDBLite consensus disorder prediction 335 356 - -
Pral5393g00022 673 FunFam RING-type E3 ubiquitin transferase 346 497 - -
Pral5393g00022 673 Gene3D - 346 670 IPR011989 -
Pral5393g00022 673 SUPERFAMILY ARM repeat 361 646 IPR016024 -
Pral5393g00022 673 MobiDBLite consensus disorder prediction 340 356 - -
Pral5393g00022 673 CDD MLKL_NTD 21 143 - -
Pral5393g00022 673 PANTHER U BOX DOMAIN-CONTAINING 33 639 - -
Pral5393g00022 673 FunFam RING-type E3 ubiquitin transferase 537 656 - -
Pral5393g00022 673 FunFam RING-type E3 ubiquitin transferase 263 336 - -
Pral5393g00022 673 Pfam U-box domain 263 333 IPR003613 GO:0004842|GO:0016567
Pral5393g00022 673 Coils Coil 627 647 - -
Pral5393g00022 673 SMART Ubox_2 266 329 IPR003613 GO:0004842|GO:0016567
Pral5393g00022 673 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Pral5393g00022 673 ProSiteProfiles U-box domain profile. 262 336 IPR003613 GO:0004842|GO:0016567
Pral5393g00022 673 Pfam Armadillo/beta-catenin-like repeat 390 429 IPR000225 GO:0005515
Pral5393g00022 673 Pfam Armadillo/beta-catenin-like repeat 473 511 IPR000225 GO:0005515
Pral5393g00022 673 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 442 484 IPR000225 GO:0005515
Pral5393g00022 673 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 524 566 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5393g00022 Pral-Chr5393 92569 97498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5393g00022 6 643 U-box Gene Family AT3G46510 72.144 0.0 939
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5393g00022 - - qsa:O6P43_000217 1033.86