Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5393g00019 ATGCAGCTAAGTAACTTCTTTCAGGTTAAGGCAACCAGTGTGATAGGTGAAGCCGAGCAAGTGCACAAAGGAATTGTTGATTTAATCATCGGGCATGGTGTTAGGAAGCTTGTTATAGGAGCAGTGCCTGAGAATCGCATGAAGGTGAAAAGGAATTCCAAGAAGGCAAATTATGCTGCCAAGAATGCTCCCCCATTCTGTGAGATATGGTTTGTCCACAAAGGTAAGCACATATGGACAAGAGAAGCTTCTGAGAATCCTTGTTCCTTGTCTTTACAATCTCAATCTGAGACTGCTGCCTCAGACAGCTTGATAACTAGATCGTTTCAATATGGTAAGAGTGAATTATTCCATAGATCAAATTCTGCAAGAACTGCACTCTGTACTGGAACTGGTAGTTTGTCTCAGGGTGAAATCTTAGAAGTGGGCGCGACTTCTTCATCCAAATCATCTGCTTCTACCAGTTACTCTTCTCCCCAAAATTCTACTGGGGATTATTTAGAGACTTCTGATGATGTTGAAGAAGATAGACTTCGTAATCAACTTGCCGAAGCCAGAATAGAAGTTGAAGCTGCGAAAGATAAGGGTTTTGCAGAGCTTTTGAAATGCAAAAGACTTGAAGCAGAAGCTATGGACGCCATAAAGAAGGTCAATATGCTTGAATCTGCTTATGCATATGAAGTAAAGCTAAGAAAGGAGGCAGAGAATGCACTGCAAGCCACAGTACAGGAGCAACAAGAGCTCTTGTATGAGAGTGAAGAAGTTGCTAGTATGCTGCAGAGGACCATGAGAAATATTGCCCTTCTGGACAGTCGTGCACAGGAAGCAAACCGCCGGCATGATGAAGCTGCAGCTGAGTTGTTATTAATTCAAGCATCCATCTCAACCCTGTGGCATGAAAGGCAGCAGATCAGGAGACAAAAAATGGAAGCCCTCCGCTGGCTTGAGCGATGGAAAAGTCGGGGGCATTTTGGAGCTGTACACTGCCATGGGGTCGTTGGATTTGCTGAAGAATTATCAGAGTTAGCAGAATTTTCACTTTCTGATCTTCAAAATGCTACATGCAATTTTTCTGAGAGCTTCAAAATTGCACAGGGAGGATATGGTTGTATTTATAAGGGGGAAATGCTGGGCAGGACAGTTGCTATAAGGAAGTTCCATCCACATAACATGCAAGGACCGACTGAGTTTCATCAAGAGGTTCAAGTTCTTGGCAGTCTCCAGCATCCTCATCTATTGACTTTGCTTGGTGTTTGTCCTGAAGCCTGGTTACTAGTGTATGAGTACTTACCCAATGGAAGTCTTCAAGACTTCCTATTCCGGAAAAACAACAATTCCGCTCTGACATGGAATAGCCGATCACGCATGATTGCTGAAATTGCTAGTGCTCTTTGCTTTTTACACACTTCCAAACCTAAAACTATTGTCCATGGTAATCTAAAGCCTGAAACAATTCTTCTTGACTCTGCACTTAGTTGCAAGATATGCGATTTTGGGTTCTGCAGACTGTTGACAGAGGAGTCACTCTATCGTCCTAGTTTCAGATTCAGCAGTGAGTTAAAAAGTACTTCTACATATACAGATCCAGAGTTTGAGAGGACTGGAATACTAACGCCGAAGTCTGATATCTATTCCTTTGGACTTATCATTTTGCAACTCCTCACTGGCAGGACTATTCCAGTTGGGTTAGCAGGTGAGGTACGCAAGGCAGTATCATGTGGAAAATTGTGTTCAATTTTGGATTCTTCAGCTGGAGAATGGCCTTCAGTTGTAGCAACACGATTGGTTGAACTGGGACTGCAATGCTGTCAGCAAAATGGCAGAGATAGACCCGAGCTTACACCTACTCTGGTGAGGGAATTGGAGCAATTGCATGTTTCAGAAGACCGACCAGTGCCATCATTTTTCCTGTGTCCCATCCTTCAGGAAATAATGCACGATCCCCAGGTTGCAGCGGACGGATTCACTTACGAAGGGGAAGCCATACGGGAGTGGCTGGAAAATGGTCATGATACTTCTCCCATGACTAATTTACAATTGAGTCACCTGCATCTGACGCCCAATCATGCACTTCGTCTTGCGATCCAAGACTGGCTTTGCAAATCCTGA 2109 0.4381 MQLSNFFQVKATSVIGEAEQVHKGIVDLIIGHGVRKLVIGAVPENRMKVKRNSKKANYAAKNAPPFCEIWFVHKGKHIWTREASENPCSLSLQSQSETAASDSLITRSFQYGKSELFHRSNSARTALCTGTGSLSQGEILEVGATSSSKSSASTSYSSPQNSTGDYLETSDDVEEDRLRNQLAEARIEVEAAKDKGFAELLKCKRLEAEAMDAIKKVNMLESAYAYEVKLRKEAENALQATVQEQQELLYESEEVASMLQRTMRNIALLDSRAQEANRRHDEAAAELLLIQASISTLWHERQQIRRQKMEALRWLERWKSRGHFGAVHCHGVVGFAEELSELAEFSLSDLQNATCNFSESFKIAQGGYGCIYKGEMLGRTVAIRKFHPHNMQGPTEFHQEVQVLGSLQHPHLLTLLGVCPEAWLLVYEYLPNGSLQDFLFRKNNNSALTWNSRSRMIAEIASALCFLHTSKPKTIVHGNLKPETILLDSALSCKICDFGFCRLLTEESLYRPSFRFSSELKSTSTYTDPEFERTGILTPKSDIYSFGLIILQLLTGRTIPVGLAGEVRKAVSCGKLCSILDSSAGEWPSVVATRLVELGLQCCQQNGRDRPELTPTLVRELEQLHVSEDRPVPSFFLCPILQEIMHDPQVAADGFTYEGEAIREWLENGHDTSPMTNLQLSHLHLTPNHALRLAIQDWLCKS 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5393g00019 702 Pfam U-box domain 632 701 IPR003613 GO:0004842|GO:0016567
Pral5393g00019 702 Gene3D Phosphorylase Kinase; domain 1 333 429 - -
Pral5393g00019 702 SMART Ubox_2 635 698 IPR003613 GO:0004842|GO:0016567
Pral5393g00019 702 Coils Coil 175 195 - -
Pral5393g00019 702 SUPERFAMILY Protein kinase-like (PK-like) 341 619 IPR011009 -
Pral5393g00019 702 Coils Coil 203 223 - -
Pral5393g00019 702 Coils Coil 231 251 - -
Pral5393g00019 702 Pfam Protein tyrosine and serine/threonine kinase 362 614 IPR001245 GO:0004672|GO:0006468
Pral5393g00019 702 ProSiteProfiles U-box domain profile. 631 702 IPR003613 GO:0004842|GO:0016567
Pral5393g00019 702 MobiDBLite consensus disorder prediction 145 167 - -
Pral5393g00019 702 MobiDBLite consensus disorder prediction 145 172 - -
Pral5393g00019 702 Gene3D Transferase(Phosphotransferase) domain 1 430 631 - -
Pral5393g00019 702 ProSiteProfiles Protein kinase domain profile. 357 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5393g00019 702 Coils Coil 259 286 - -
Pral5393g00019 702 SUPERFAMILY RING/U-box 629 701 - -
Pral5393g00019 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 702 IPR013083 -
Pral5393g00019 702 PANTHER OS02G0152300 PROTEIN 8 696 - -
Pral5393g00019 702 CDD RING-Ubox_WDSUB1-like 633 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5393g00019 Pral-Chr5393 56281 61191 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5393g00019 9 699 U-box Gene Family AT2G45910 37.812 1.59e-153 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pral5393g00019 PK_Tyr_Ser-Thr 1.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5393g00019 - - pcin:129312791 1192.95