Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5393g00018 ATGGAGCTCTTGAACCCTTCTCATCCTCTTCAGCATCAGCAGTCTGTGGCCACCGGAGACCCCTTCCATGGCGTCTCGCCGCCCCTCACTCTGACTTTGCCCTTCGCCTGCCAGGGAGCTGCCACCTCTCAGCTGCCCCAGCCCATGGCTGAATGTACTGAATCCGTGTACGTTGCTGTCGGAAAGTCGGTGGACAAAGCTGTCCATTTGCTTCAATGGACTTTTGGCCGCTTTAGCAACTCCCAAATTTGCATTCTCCATGTTCATCAACCTTCCTCTATGATCCCAACTCTTCTGGGAAAATTGCCTGCGACCCAAGCAAATCCTGAAGTCATTTCTGCTTTCAGAAGAGAGGAAAGAGAACAGACCACGAGGCTTTTGGAGAATTACCTGAGCGTTTGCCATGCAGCTAAGGTTAAGGCAACCAGTGTGATAGGTGAAGCCGAGCAAGTGCACAAAGGAATTGTTGATTTAATCATCGGGCATGGTGTTAGGAAGCTTGTTATAGGAGCAGTGCCTGAGAATCGCATGAAGGTGAAAAGGAATTCCAAGAAGGCAAATTATGCTGCCAAGAATGCTCCCCCATTCTGTGAGATATGGTTTGTCCACAAAGGTAAGCACATATGGACAAGAGAAGCTTCTGAGAATCCTTGTTCCTTGTCTTTACAATCTCAATCTGAGACTGCTGCCTCAGACAGCTTGATAACTAGATCGTTTCAATATGGTAAGAGTGAATTATTCCATAGATCAAATTCTGCAAGAACTGCACTCTGTACTGGAACTGGTAGTTTGTCTCAGGGTGAAATCTTAGAAGTGGGCGCGACTTCTTCATCCAAATCATCTGCTTCTACCAGTTACTCTTCTCCCCAAAATTCTACTGGGGATTATTTAGAGACTTCTGATGATGTTGAAGAAGATAGACTTCGTAATCAACTTGCCGAAGCCAGAATAGAAGTTGAAGCTGCGAAAGATAAGGGTTTTGCAGAGCTTTTGAAATGCAAAAGACTTGAAGCAGAAGCTATGGACGCCATAAAGAAGGTCAATATGCTTGAATCTGCTTATGCATATGAAGTAAAGCTAAGAAAGGAGGCAGAGAATGCACTGCAAGCCACAGTACAGGAGCAACAAGAGCTCTTGTATGAGAGTGAAGAAGTTGCTAGTATGCTGCAGAGGACCATGAGAAATATTGCCCTTCTGGACAGTCGTGCACAGGAAGCAAACCGCCGGCATGATGAAGCTGCAGCTGAGTTGTTATTAATTCAAGCATCCATCTCAACCCTGTGGCATGAAAGGCAGCAGATCAGGAGACAAAAAATGGAAGCCCTCCGCTGGCTTGAGCGATGGAAAAGTCGGGGGCATTTTGGAGCTGTACACTGCCATGGGGTCGTTGGATTTGCTGAAGAATTATCAGAGTTAGCAGAATTTTCACTTTCTGATCTTCAAAATGCTACATGCAATTTTTCTGAGAGCTTCAAAATTGCACAGGGAGGATATGGTTGTATTTATAAGGGGGAAATGCTGGGCAGGACAGTTGCTATAAGGAAGTTCCATCCACATAACATGCAAGGACCGACTGAGTTTCATCAAGAGGTTCAAGTTCTTGGCAGTCTCCAGCATCCTCATCTATTGACTTTGCTTGGTGTTTGTCCTGAAGCCTGGTTACTAGTGTATGAGTACTTACCCAATGGAAGTCTTCAAGACTTCCTATTCCGGAAAAACAACAATTCCGCTCTGACATGGAATAGCCGATCACGCATGATTGCTGAAATTGCTAGTGCTCTTTGCTTTTTACACACTTCCAAACCTAAAACTATTGTCCATGGTAATCTAAAGCCTGAAACAATTCTTCTTGACTCTGCACTTAGTTGCAAGATATGCGATTTTGGGTTCTGCAGACTGTTGACAGAGGAGTCACTCTATCGTCCTAGTTTCAGATTCAGCAGTGAGTTAAAAAGTACTTCTACATATACAGATCCAGAGTTTGAGAGGACTGGAATACTAACGCCGAAGTCTGATATCTATTCCTTTGGACTTATCATTTTGCAACTCCTCACTGGCAGGACTATTCCAGTTGGGTTAGCAGGTGAGGTACGCAAGGCAGTATCATGTGGAAAATTGTGTTCAATTTTGGATTCTTCAGCTGGAGAATGGCCTTCAGTTGTAGCAACACGATTGGTTGAACTGGGACTGCAATGCTGTCAGCAAAATGGCAGAGATAGACCCGAGCTTACACCTACTCTGGTGAGGGAATTGGAGCAATTGCATGTTTCAGAAGACCGACCAGTGCCATCATTTTTCCTGTGTCCCATCCTTCAGGAAATAATGCACGATCCCCAGGTTGCAGCGGACGGATTCACTTACGAAGGGGAAGCCATACGGGAGTGGCTGGAAAATGGTCATGATACTTCTCCCATGACTAATTTACAATTGAGTCACCTGCATCTGACGCCCAATCATGCACTTCGTCTTGCGATCCAAGACTGGCTTTGCAAATCCTGA 2499 0.4526 MELLNPSHPLQHQQSVATGDPFHGVSPPLTLTLPFACQGAATSQLPQPMAECTESVYVAVGKSVDKAVHLLQWTFGRFSNSQICILHVHQPSSMIPTLLGKLPATQANPEVISAFRREEREQTTRLLENYLSVCHAAKVKATSVIGEAEQVHKGIVDLIIGHGVRKLVIGAVPENRMKVKRNSKKANYAAKNAPPFCEIWFVHKGKHIWTREASENPCSLSLQSQSETAASDSLITRSFQYGKSELFHRSNSARTALCTGTGSLSQGEILEVGATSSSKSSASTSYSSPQNSTGDYLETSDDVEEDRLRNQLAEARIEVEAAKDKGFAELLKCKRLEAEAMDAIKKVNMLESAYAYEVKLRKEAENALQATVQEQQELLYESEEVASMLQRTMRNIALLDSRAQEANRRHDEAAAELLLIQASISTLWHERQQIRRQKMEALRWLERWKSRGHFGAVHCHGVVGFAEELSELAEFSLSDLQNATCNFSESFKIAQGGYGCIYKGEMLGRTVAIRKFHPHNMQGPTEFHQEVQVLGSLQHPHLLTLLGVCPEAWLLVYEYLPNGSLQDFLFRKNNNSALTWNSRSRMIAEIASALCFLHTSKPKTIVHGNLKPETILLDSALSCKICDFGFCRLLTEESLYRPSFRFSSELKSTSTYTDPEFERTGILTPKSDIYSFGLIILQLLTGRTIPVGLAGEVRKAVSCGKLCSILDSSAGEWPSVVATRLVELGLQCCQQNGRDRPELTPTLVRELEQLHVSEDRPVPSFFLCPILQEIMHDPQVAADGFTYEGEAIREWLENGHDTSPMTNLQLSHLHLTPNHALRLAIQDWLCKS 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5393g00018 832 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 64 178 - -
Pral5393g00018 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 762 832 IPR013083 -
Pral5393g00018 832 PANTHER OS02G0152300 PROTEIN 56 826 - -
Pral5393g00018 832 ProSiteProfiles U-box domain profile. 761 832 IPR003613 GO:0004842|GO:0016567
Pral5393g00018 832 Pfam Protein tyrosine and serine/threonine kinase 492 744 IPR001245 GO:0004672|GO:0006468
Pral5393g00018 832 Coils Coil 333 353 - -
Pral5393g00018 832 SUPERFAMILY RING/U-box 759 831 - -
Pral5393g00018 832 CDD STK_N 55 205 - -
Pral5393g00018 832 MobiDBLite consensus disorder prediction 275 297 - -
Pral5393g00018 832 CDD RING-Ubox_WDSUB1-like 763 818 - -
Pral5393g00018 832 MobiDBLite consensus disorder prediction 275 302 - -
Pral5393g00018 832 Gene3D HUPs 49 176 IPR014729 -
Pral5393g00018 832 Coils Coil 389 416 - -
Pral5393g00018 832 MobiDBLite consensus disorder prediction 1 21 - -
Pral5393g00018 832 SMART Ubox_2 765 828 IPR003613 GO:0004842|GO:0016567
Pral5393g00018 832 SUPERFAMILY Protein kinase-like (PK-like) 471 749 IPR011009 -
Pral5393g00018 832 Coils Coil 361 381 - -
Pral5393g00018 832 Pfam U-box domain 762 831 IPR003613 GO:0004842|GO:0016567
Pral5393g00018 832 Gene3D Transferase(Phosphotransferase) domain 1 560 761 - -
Pral5393g00018 832 ProSiteProfiles Protein kinase domain profile. 487 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5393g00018 832 Gene3D Phosphorylase Kinase; domain 1 464 559 - -
Pral5393g00018 832 Coils Coil 305 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5393g00018 Pral-Chr5393 56281 61879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5393g00018 54 829 U-box Gene Family AT2G45910 37.794 4.63e-178 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pral5393g00018 PK_Tyr_Ser-Thr 1.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5393g00018 - - pcin:129312791 1429.08