Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5393g00016 ATGGGTAACTGTGTTCCCAGGTTCTCGTTTATTGCTGACATGGGAGGTTGTCTGGGCTCCCAAATTAAAGCTGAGAGCCAGTGTAACACAGGGCCGAATTCAAAACACGTGAGCACTGATGGAAGTGATCTGAGCAGCACGGGCAGTGAGGTCTCAAAGGCCTCGACAACTCATACTCGCCGGAGTGTGGGTGAGATCTTGCAGTCGCCCGATTTGAAGAGCTTTACTTATGCAGAGCTGAAGGCGGCTACACGAAATTTCCGACCAGATAGTGTTTTAGGAGAAGGTGGTTTTGGATCAGTTTTCAAAGGGTGGATTGATGAGCAGTCCCTTACAGCTGCCAAGCCGGGAACTGGCATTATTATCGCTGTGAAAAGACTTGAGCAAGATAGTATGCAAGGTCACAATGAGTGGCTGGCTGAAGTGAATTTTCTTGGACAATTTTCTCATCCCCATCTTGTAAAGTTGATCGGGTATTGCCTTGAAGACGACCACCGCCTTCTGGTGTATGAATTTATGCCTCGAGGCAGCCTGGAGAATCATTTGTTCAGGAGGGGCTCTTATTTCCAACCCCTCTCTTGGAGCCTCCGTTTGAAGGTGGCTCTTGGTGCTGCCAGAGGGCTTGCATTTCTTCACAGTGCTGAAACAAAAGTGATATATAGGGACTTCAAGACCTCAAACATCTTGCTTGATTCAAATTACAATCCAAAACTTTCTGATTTTGGGTTGGCCAAGGATGGACCCGGGGGGGACAAAAGTCATGTCTCTACCAGAGTATTAGGAACCTATGGATATGCAGCTCCCGAGTATATAGCCACCGGTCACCTGACTGCAAAGAGTGATGTATATAGTTTTGGGGTGGTACTGGTTGAAATGCTATCAGGTCGGCGAGCAATGGACAAGAGTCGACCATCAGGACAGCGCAACTTGGTGGAGTGGGCTAAGCCATACCTGGCGAACAAACGTAAGCTTTTTCTCGTGCTGGATACTCGTCTCGAGGGTCAGTACACAATAGACGAGGCCTACAAGACAGCGACGTTGGCATTGCGATGCATTTCAATCGAATCCAAGTTCAGGCCAAGCATGGAAGAGGTTGTTTCTACATTGGAGCAGCTTCAAGTTCCCATTGTAAATGGAGGCACACAAGAGCCGTCTGTGAAGAGATCCAGTGGCAGAAAAAGTGAAGGTGACGCTAAGAATGGGAGGACCACCACACCTTACCCCCGCCCATCCGCTTCCCCTCTCTATGCTTGA 1254 0.4872 MGNCVPRFSFIADMGGCLGSQIKAESQCNTGPNSKHVSTDGSDLSSTGSEVSKASTTHTRRSVGEILQSPDLKSFTYAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQSLTAAKPGTGIIIAVKRLEQDSMQGHNEWLAEVNFLGQFSHPHLVKLIGYCLEDDHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALGAARGLAFLHSAETKVIYRDFKTSNILLDSNYNPKLSDFGLAKDGPGGDKSHVSTRVLGTYGYAAPEYIATGHLTAKSDVYSFGVVLVEMLSGRRAMDKSRPSGQRNLVEWAKPYLANKRKLFLVLDTRLEGQYTIDEAYKTATLALRCISIESKFRPSMEEVVSTLEQLQVPIVNGGTQEPSVKRSSGRKSEGDAKNGRTTTPYPRPSASPLYA 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5393g00016 417 Pfam Protein tyrosine and serine/threonine kinase 91 369 IPR001245 GO:0004672|GO:0006468
Pral5393g00016 417 FunFam Probable serine/threonine-protein kinase PBL8 173 388 - -
Pral5393g00016 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Pral5393g00016 417 FunFam Serine/threonine-protein kinase BIK1 54 172 - -
Pral5393g00016 417 Gene3D Phosphorylase Kinase; domain 1 62 172 - -
Pral5393g00016 417 ProSiteProfiles Protein kinase domain profile. 87 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5393g00016 417 PANTHER OS01G0588500 PROTEIN-RELATED 52 373 - -
Pral5393g00016 417 MobiDBLite consensus disorder prediction 28 60 - -
Pral5393g00016 417 CDD STKc_IRAK 93 372 - -
Pral5393g00016 417 Gene3D Transferase(Phosphotransferase) domain 1 173 380 - -
Pral5393g00016 417 SUPERFAMILY Protein kinase-like (PK-like) 61 369 IPR011009 -
Pral5393g00016 417 MobiDBLite consensus disorder prediction 377 417 - -
Pral5393g00016 417 ProSitePatterns Protein kinases ATP-binding region signature. 93 125 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5393g00016 Pral-Chr5393 45380 48026 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5393g00016 65 369 Glycoside Hydrolase AT3G07070 49.020 1.77e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pral5393g00016 PK_Tyr_Ser-Thr 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5393g00016 - - qsu:111987244 630.172