Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5392g00005 ATGATGAACTCCGACACGGCACCCCTCCCGGCCTCCTACTGGTGCTACAGCTGCACCCGCTTTGTCCGCCTCTCCGATCGGGGTGATGTCGCCTGCCCTCACTGCCAAAGCGGCTTCGTTGAAGAGATCCACGACCACCCTTCCTCCGATCATCACCACCTGAGCCCCTTTCCTCCTCCCATCTTCCCCGATTCAGCTCCTACTTCCTACGATTTCAGCCGACAAGGGTTCCGTCAAAGACGCCGCAACGCCGGCAACAGATCGCCCTTTAACCCTGTAATTGTTCTTCGTGGACCCGTCGACGCAACCGCCGGACAGAACGGTGTCGGTGGTGACCAGGAGGAAAGCAGCTTCGAGTTGTACTACGATGACGGGGACGGCTCTGGTCTCCGACCCTTGCCGCCGACCATGTCTGAGTTCTTGTTAGGGTCAGGGTTCGAACGGCTTCTGGAGCAGTTTGCTCAGATCGAAATGAATGGGTTCGGGCGTTCCGAGAACCCGCCCGCTTCCAAAGCAGCCGTAGAGTCGATGCCCACGGTCGTTATTGAGGGGACCCATGTGGGTTCCGATGCCCACTGTGCCGTGTGCAAGGAGGCGTTTGAACTGGGTACGGAGGCGCGTGAGATGCCCTGCAAGCACATATACCACTCAGACTGCATCCTCCCGTGGCTTTCAATGCGCAATTCGTGCCCCGTGTGCCGCCATGAGCTGCCGTCAGATCGGAACACAGTGGACAGTAGAATGTCGGGGCAAATCGATGACGAAACAGTAGGATTGACGATTTGGAGGCTGCCTGGCGGGGGCTTCGCGGTTGGGAGGTTCTCTGGTGGTCGCAGAGCCGGTGAGAGTCATTTCCCTGTTGTATACACAGAAATGGACGGAGGACTCAATGCAAACGGAGCTCCGAGAACAGTTTCCCGAGCAGCGAGAAGCACCAGAGTCAGAGAAAGTCGTGGCTTTGGCAGAATCGTTCGCAACTTCTTGTCATTCTTTGGGAGGCGCCGGTCAAGGTCAAGTTCAAGTTCAAGTTCATCAGCTGGTTCTGAGCGCGAGTCCATGAGCATAAGTCGTAGCCATTCGATCTCATTATTCGGTAGGAACTCGAGGAGGCGCAGCAGAACTTGGGTCTTGGAAGATTGA 1140 0.5675 MMNSDTAPLPASYWCYSCTRFVRLSDRGDVACPHCQSGFVEEIHDHPSSDHHHLSPFPPPIFPDSAPTSYDFSRQGFRQRRRNAGNRSPFNPVIVLRGPVDATAGQNGVGGDQEESSFELYYDDGDGSGLRPLPPTMSEFLLGSGFERLLEQFAQIEMNGFGRSENPPASKAAVESMPTVVIEGTHVGSDAHCAVCKEAFELGTEAREMPCKHIYHSDCILPWLSMRNSCPVCRHELPSDRNTVDSRMSGQIDDETVGLTIWRLPGGGFAVGRFSGGRRAGESHFPVVYTEMDGGLNANGAPRTVSRAARSTRVRESRGFGRIVRNFLSFFGRRRSRSSSSSSSSAGSERESMSISRSHSISLFGRNSRRRSRTWVLED 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5392g00005 379 SMART ring_2 193 233 IPR001841 -
Pral5392g00005 379 Pfam Ring finger domain 192 234 IPR001841 -
Pral5392g00005 379 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Pral5392g00005 379 CDD RING-H2_RNF126-like 193 234 - -
Pral5392g00005 379 ProSiteProfiles Zinc finger RING-type profile. 193 234 IPR001841 -
Pral5392g00005 379 SUPERFAMILY RING/U-box 173 243 - -
Pral5392g00005 379 FunFam E3 ubiquitin-protein ligase RING1-like 155 240 - -
Pral5392g00005 379 Pfam Protein of unknown function (DUF1117) 257 369 IPR010543 -
Pral5392g00005 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 70 238 - -
Pral5392g00005 379 MobiDBLite consensus disorder prediction 335 359 - -
Pral5392g00005 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 240 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5392g00005 Pral-Chr5392 25407 26739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5392g00005 132 240 C3H Transcription Factor Family AT5G01980 45.872 1.41e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5392g00005 K11982 - gmx:100804867 490.73