Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5392g00003 ATGGGGGAGGAGGTCAAGATGACCGATTACGACGGCGCTGTCCCCGATGATGATGAGAGAGTCCTCGAATGGGAGTTGGGCCTCCCTACTGCCGATGATCTCACTCCCCTCTCTCAGCCTCTGATCCCGCCGGAGCTCGCCTCCGCCTTCAGCATATCGCCGGAGCCCAGCCGGAGTCTCCTCGACGTTAATCGTGCCTCCCGGAATACTCTCACCAATCTTCGCGGCGGAAGCTCTCAGGCCTTTTCCTCCAATAATTTCAAGTCGCTCAATGATGACGGGTGTCAGGACCCCATCGTGGTGGAGGCCGATGAAGAGGGCGATCGACATGGGTCGGGGTCCGATTCTCGGAAACTCAGGAAGATCGACTGCACCGAAGAAGCTGATTCGGCTCTGCGGACTGAGAATTCCACGGATGATCCGTCTGCTCGGACCTTGAAGCGGCCTCGGCTTGTGTGGACTCCGCAGTTGCACAAGCGGTTTGTGGATGTGGTGGCTCATCTGGGAATCAAGAACGCGGTGCCGAAGACGATTATGCAATTGATGAACGTCGAAGGATTGACCCGAGAAAATGTCGCCAGCCATCTTCAGAAGTATCGGCTTTACTTGAAGAGGATGCAGGGTTTATCCAACGAGGGTCCTTCATCATCGGACCAGCTCTTCGCTTCCACTCCGGTGCCGCAAAGCCTACACGATTCTGGTGGAAGTGGGCACTCTCATGGAAACGGGCATCTTCCGGTCCCGATTCCGATGCTATATCCACCGCCAATGATGCCCATGCCGGTTCTTGGAATGCCCCATGGTCAGGGTCATCCGCATGCTCACATGGGAATGCCGGTGGCCAATCATGGGTTCGACTCACATCCATATAATCTGTTGCAGCCAAGGGATTGGTCTGGCAAGAAATTTGCTTCGGTTGTATCAGACCCTCACGTTGCTACTAACGATAAATGA 954 0.5524 MGEEVKMTDYDGAVPDDDERVLEWELGLPTADDLTPLSQPLIPPELASAFSISPEPSRSLLDVNRASRNTLTNLRGGSSQAFSSNNFKSLNDDGCQDPIVVEADEEGDRHGSGSDSRKLRKIDCTEEADSALRTENSTDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHDSGGSGHSHGNGHLPVPIPMLYPPPMMPMPVLGMPHGQGHPHAHMGMPVANHGFDSHPYNLLQPRDWSGKKFASVVSDPHVATNDK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5392g00003 317 Pfam Myb-like DNA-binding domain 152 200 IPR001005 -
Pral5392g00003 317 NCBIfam myb-like DNA-binding domain, SHAQKYF class 149 201 IPR006447 GO:0003677
Pral5392g00003 317 MobiDBLite consensus disorder prediction 209 236 - -
Pral5392g00003 317 MobiDBLite consensus disorder prediction 103 122 - -
Pral5392g00003 317 Gene3D - 145 207 - -
Pral5392g00003 317 SUPERFAMILY Homeodomain-like 145 205 IPR009057 -
Pral5392g00003 317 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 12 279 IPR044841 GO:0003700|GO:0006355
Pral5392g00003 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 204 IPR017930 -
Pral5392g00003 317 MobiDBLite consensus disorder prediction 209 245 - -
Pral5392g00003 317 FunFam Two-component response regulator 144 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5392g00003 Pral-Chr5392 16110 18869 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5392g00003 1 290 G2-like Transcription Factor Family AT3G46640 56.250 1.43e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral5392g00003 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5392g00003 - - qsa:O6P43_028203 467.233