Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5391g00024 ATGGAGTCTGAAGATCAGGCAACATCGTCAGAAACAAACCCAAGCGATGAGCAAGGAGGAAGTCAAGTGACAAGGTCGTACGAATGCACCTTCTGTAAAAGGGGATTTTCCAATGCGCAAGCATTGGGAGGCCACATGAACATTCACAGGAAAGATAAAGCCAAGCTGAAGCAATCTTCCAACCAAGCTCATCGTCACCGTCATCATCGTCAGCCATCTTTGGATGTTCACAGTAAGGTTGAAGACAGAACTCACTGGCCTACCTGCAATATGGAAGATTCCTCTTCCAGAGACGAAAACTGCTCCGAACTTCGCCTGAAGCAGCTTCCTTTATTTGCAGAAACACCCTGTGGTGAAACAGAAAAGCCAGAAGAATTAGGTCATATTCATGATAGAGGAATTGCTGAAGAAATCAAGGGTTCGCCCTCGGATTTGGACCTTGAACTCAGACTAGGGCCTGACCCACCCTCCCCCACTATTGGCACCCGAAAATTCTTTTGA 501 0.4691 MESEDQATSSETNPSDEQGGSQVTRSYECTFCKRGFSNAQALGGHMNIHRKDKAKLKQSSNQAHRHRHHRQPSLDVHSKVEDRTHWPTCNMEDSSSRDENCSELRLKQLPLFAETPCGETEKPEELGHIHDRGIAEEIKGSPSDLDLELRLGPDPPSPTIGTRKFF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5391g00024 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Pral5391g00024 166 Gene3D Classic Zinc Finger 3 86 - -
Pral5391g00024 166 SMART c2h2final6 27 49 IPR013087 -
Pral5391g00024 166 MobiDBLite consensus disorder prediction 143 166 - -
Pral5391g00024 166 MobiDBLite consensus disorder prediction 52 80 - -
Pral5391g00024 166 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Pral5391g00024 166 MobiDBLite consensus disorder prediction 1 23 - -
Pral5391g00024 166 Pfam C2H2-type zinc finger 27 51 - -
Pral5391g00024 166 PANTHER OS07G0101800 PROTEIN 5 155 - -
Pral5391g00024 166 SUPERFAMILY beta-beta-alpha zinc fingers 25 54 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5391g00024 Pral-Chr5391 91894 92394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5391g00024 20 162 C2H2 Transcription Factor Family AT3G53820 38.217 7.67e-21 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5391g00024 zf-C2H2_6 9.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5391g00024 - - pcin:129313190 218.009