LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5391g00022	ATGGCTTTCACCAAAACGACCGGTGCCGTCCAGGCGGCCCAAAACCCTTCGCAACCGGCGAAACTACGGTGGGGCGAACTAGATGAGGATGACGGCGAGGATCTTGATTTTTTGCTGCCGCCGCGACAGGTGATAGGTCCCGATGAGAACGGCATAAAGAAGGTGATCGAGTACAAATTCAACGAAGATGGCAATAAGGTGAAGATCACGACAACCACTCGTACTCGCAAGCTTGCTAACGCTCGCCTCAGTAAGCGGGCCGTTGAGCGGCGATCGTGGGCCAAGTTCGGCGATGCGGTTCACGAGGATGTTAGCAGCAGGCTTACTATGGTGTCCACGGAAGAGATCCTTCTTGAGCGACCTAGGGCTCCGGGTAGCAAGCCAGAAGAACCGAAGGCTGCTGGAGACCCATTGGCTCAGTTCCAAAAAGGTGCTGTTCTTATGGTTTGTAGAACTTGTGGGAAGAAGGGAGACCATTGGACGTCAAGGTGTCCATACAAGGATCTAGCCCAACCAATGGAAGCATTCATTGATAAGCCTGCTGCATCAGAAGCTGCCACTGCCACTTCTGGTCCAACCAAGGGAGCATATGTTCCTCCTGGTCTGAGAGCAGGTGCAGAGAGAACTGGATCAGATATGCGGCGAAGGAATGATGAAAATTCTGTACGGGTCACTAATCTCTCTGAGGACACAAGAGAGCCGGACTTGCTTGAACTGTTCCGTCCTTTTGGTGCTGTAAGCAGAGTCTATGTTGCTGTTGATCAGAAGACTGGTATTAGCAGAGGATTTGGCTTTGTTAACTTTGTGAACAGGGAAGATGCCCAGAGAGCAATTAACAAACTGAATGGATATGGTTATGACAGTCTAATCCTTAGAGTTGAATGGGCCACTCCAAGAACGAACTAA	906	0.5055	MAFTKTTGAVQAAQNPSQPAKLRWGELDEDDGEDLDFLLPPRQVIGPDENGIKKVIEYKFNEDGNKVKITTTTRTRKLANARLSKRAVERRSWAKFGDAVHEDVSSRLTMVSTEEILLERPRAPGSKPEEPKAAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPMEAFIDKPAASEAATATSGPTKGAYVPPGLRAGAERTGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGISRGFGFVNFVNREDAQRAINKLNGYGYDSLILRVEWATPRTN	301

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5391g00022	301	SMART	rrm1_1	221	294	IPR000504	GO:0003723
	Pral5391g00022	301	Hamap	Eukaryotic translation initiation factor 3 subunit G [EIF3G].	21	300	IPR017334	GO:0003743\|GO:0005737\|GO:0005852
	Pral5391g00022	301	FunFam	Eukaryotic translation initiation factor 3 subunit G	185	301	-	-
	Pral5391g00022	301	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	220	298	IPR000504	GO:0003723
	Pral5391g00022	301	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	222	287	IPR000504	GO:0003723
	Pral5391g00022	301	CDD	RRM_eIF3G_like	221	296	IPR034240	-
	Pral5391g00022	301	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	28	297	-	-
	Pral5391g00022	301	CDD	eIF3G	50	168	IPR024675	-
	Pral5391g00022	301	MobiDBLite	consensus disorder prediction	181	220	-	-
	Pral5391g00022	301	Pfam	Eukaryotic translation initiation factor 3 subunit G	43	169	IPR024675	-
	Pral5391g00022	301	MobiDBLite	consensus disorder prediction	1	18	-	-
	Pral5391g00022	301	MobiDBLite	consensus disorder prediction	1	23	-	-
	Pral5391g00022	301	Gene3D	-	181	301	IPR012677	-
	Pral5391g00022	301	SUPERFAMILY	RNA-binding domain, RBD	218	300	IPR035979	GO:0003676
	Pral5391g00022	301	PIRSF	Transl_init_eIF-3_RNA-bind	13	301	IPR017334	GO:0003743\|GO:0005737\|GO:0005852

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5391g00022	Pral-Chr5391	73586	75844	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5391g00022	20	299	Eukaryotic Initiation Factors Gene Family	AT3G11400	69.551	2.53e-155	435

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5391g00022	K03248		-	qsu:112022532	510.76