Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5390g00061 ATGATGCACCGTTGCTGTAGCTCCCAGGGGCACGTGATGGGACCCTGTACGTGTGGTATGATTCACGGCCAAACCAATTCCTTCTCCATGCTCTTCTCTATGCCCAACCACAAATCCTATGGTGATTGCGACATGTATTCTTTCCCTTCCTCTCCTTCCTCTTCTGTTGACTGCACCCTCTCTCTGGGTACCCCGTCTACCCGTTTATCTGAAGACGAAGAAAAACACAGCCGCCATGCCCGTCGTTCTGTTTCCAACTTCTGCTGGGATCTATTACAATCCAAACACACCTCGGAATCCCACACTAAGTCCAGTCGTGGCAGCAATACTGGTAACTCCTCCAACAATGATCCCCTACTCGCTCGTCGTTGTGCTAACTGCGACACCACTTCCACTCCCCTCTGGAGAAACGGCCCTCGAGGCCCCAAGTCACTATGCAATGCCTGCGGGATTAGATTCAAGAAGGAAGAGAGAAGGGCGGGTGCTGTAGCCGCCACGACGGCGGCCAACTCAGGCGGCGTCATGGAGACGGCGCAGATGTTTTCCGGACACCACAACACTTCTTCATGGTACGCGCAGTCTCAGAGCCAGAAAATGCAGTGCCTCTCTCCGGGGATGGGCAGCGAGCTTCGCTTCGTGGACGACGCCGACCGTGACGCCGAGCGCGGCATTCCGTTTCTCTCTTGGAGACTCAACGTTACGGACAGACCGAGCCTCGTTCATGATTTTACGAGATGA 738 0.5474 MMHRCCSSQGHVMGPCTCGMIHGQTNSFSMLFSMPNHKSYGDCDMYSFPSSPSSSVDCTLSLGTPSTRLSEDEEKHSRHARRSVSNFCWDLLQSKHTSESHTKSSRGSNTGNSSNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAGAVAATTAANSGGVMETAQMFSGHHNTSSWYAQSQSQKMQCLSPGMGSELRFVDDADRDAERGIPFLSWRLNVTDRPSLVHDFTR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5390g00061 245 MobiDBLite consensus disorder prediction 103 117 - -
Pral5390g00061 245 Pfam GATA zinc finger 124 158 IPR000679 GO:0006355|GO:0043565
Pral5390g00061 245 SMART GATA_3 118 170 IPR000679 GO:0006355|GO:0043565
Pral5390g00061 245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 121 159 - -
Pral5390g00061 245 ProSitePatterns GATA-type zinc finger domain. 124 149 IPR000679 GO:0006355|GO:0043565
Pral5390g00061 245 Gene3D - 120 200 IPR013088 GO:0006355|GO:0008270
Pral5390g00061 245 ProSiteProfiles GATA-type zinc finger domain profile. 118 154 IPR000679 GO:0006355|GO:0043565
Pral5390g00061 245 PANTHER GATA TRANSCRIPTION FACTOR 18 10 245 IPR044272 GO:0003700|GO:0009908
Pral5390g00061 245 CDD ZnF_GATA 123 155 IPR000679 GO:0006355|GO:0043565
Pral5390g00061 245 MobiDBLite consensus disorder prediction 98 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5390g00061 Pral-Chr5390 312704 314131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5390g00061 17 245 C2C2-Gata Transcription Factor Family AT3G50870 44.828 4.42e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral5390g00061 GATA 5.9e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5390g00061 - - vvi:100247862 342.043