Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5390g00047 ATGGAAGAAGAGGAAAAACAGCTTTTGGAAACTCGAATCAAGGAAGAGAAGGAGGAATCCAAACATGAGCCAGACGAGGCACCAAAGCTTAATGAAAGTCAATTTAGCAAGTTGGATGAGCTTTTAACGCAAACCCAACTTTACTCGGAATTTTTGCTGGAGAAAATGGATGACATCACACTTAATGGCGGTGAACAAGAGGGCCAACAAGAGGAGGAACCGGTTGAGAAAAAGAGGGGCCGTGGCTCAAAAAGAAGAGCAAAATCAGAATACAATAATAAGAAAGCCAAAAGGGCAGTAGCTGCCATGCTTACAAGATCTAAAGAAAGTGAGAGTGCTGAAGATATGAACCTGACGGAAGAGGAAAGAATTGATAAGGAACAGAAAGAGCTCATACCTCTGTTGACAGGTGGAAAGTTGAAGCAATATCAAATGAAGGGTGTCAAATGGTTGATCTCCTTGTGGCAAAATGGACTGAATGGGATTTTGGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACTATCGGTTTCCTTGCACATCTGAAAGGGAAGGGTTTGGATGGCCCATATTTGATAATTGCTCCTCTATCAACCCTTTCTAATTGGATGAGTGAAATTTCTCGGTTTGCTCCAACACTCACTGCAATTATTTACCATGGTGACAAGAAGGACAGAGATGAGATTCGAAGGAAGCATATGCCTAGAACGATTGGCCCAAAATTTCCCATAGTCATCACTTCCTATGAAGTTGCGTTAAATGATGCTAAGAAATATCTCAGGTTCTACCATTGGAAATATGTTGTAATTGACGAGGGACACAGGCTCAAAAACTCCAAATGCAAATTAGTCCAGATGTTGAAATTCTTGCCCGTTGAAAATAAACTTCTTTTAACTGGGACACCTCTTCAGAATAACCTGGCTGAGCTATGGTCATTGTTGAACTTCATTTTACCTGACATTTTCTCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCAGTAATGGAGCAACAAAAGAAGAACTAGAAGAAGGAAGAAGAGCTCAGGTGGTAGCTAAGCTCCATGCCATCTTGCGCCCCTTTCTTCTCCGAAGGATGAAGAGTGATGTTGAGCAGATGTTACCACGAAAGAAAGAGATAATTATATATGCCAGTATGACTGAACATCAGAAGAATTTTCAGGAACATTTAATTAATAAGACATTGGAGAAATATTTTCGTGAAAAATCTGCAGTGGGACGTGCTTCCAAAAATCTTCGTAATCTGGTCATTCAGCTTAGAAAGAACTGTAATCATCCTGACCTCTTAGAGTCAGCCTTCGATGATTCGTTTCTCTATCCACCTGTCGATGAGATAGTTGAACAATGTGGGAAATTCCGTTTACTAGACCGTCTGTTGGCTCGTTTATTTGCACGGAAGCACAAAGTTCTAATCTTCAGCCAGTGGACTAAAATTTTGGATATAATGGATTACTATTTTAGTGAAAGGGGCCTTGAAGTCTGCAGAATTGATGGCAGTGTAAAGCTAGATGAGAGGAAAAGACAGATTCAGGAGTTCAATGATGTGAATAGCAATTACAGGATCTTTCTTCTCAGTACTAGGGCTGGGGGATTGGGAATCAACCTTACTGCAGCTGATACTTGTATCATTTATGACAGTGATTGGAATCCTCAGATTGATTTACAGGCCATGGATAGATGTCACAGAATAGGTCAAACTAAACCTGTTCATGTTTACAGGCTTGCTACAGCTCACTCCGTGGAGGGTCGCATGTTGAAAAGGGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGGAAAGGGGCAATTTCATCAAGAACGGATGAAGCCCAACTCAATGGATAACAAAGAGGATGAGGAATTGTTGGCATTGCTTCAAGAGGAAGAATCTGCTGAAGACAAAGCGATCCAAACAGATATTAGTGATGAAGACTTAGAGAAGCTTTTGGATCGCAGTGATCTTGTCTCTGGTAACTTAAATTGTCCGAGCAAAATTCCTCTTAAAGGGCCTGGATGGGAGGTGGTGATTCCAACTGGGAGCATGCTTTCTACTCTTAACAGCTAA 2103 0.4118 MEEEEKQLLETRIKEEKEESKHEPDEAPKLNESQFSKLDELLTQTQLYSEFLLEKMDDITLNGGEQEGQQEEEPVEKKRGRGSKRRAKSEYNNKKAKRAVAAMLTRSKESESAEDMNLTEEERIDKEQKELIPLLTGGKLKQYQMKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLIIAPLSTLSNWMSEISRFAPTLTAIIYHGDKKDRDEIRRKHMPRTIGPKFPIVITSYEVALNDAKKYLRFYHWKYVVIDEGHRLKNSKCKLVQMLKFLPVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCSNGATKEELEEGRRAQVVAKLHAILRPFLLRRMKSDVEQMLPRKKEIIIYASMTEHQKNFQEHLINKTLEKYFREKSAVGRASKNLRNLVIQLRKNCNHPDLLESAFDDSFLYPPVDEIVEQCGKFRLLDRLLARLFARKHKVLIFSQWTKILDIMDYYFSERGLEVCRIDGSVKLDERKRQIQEFNDVNSNYRIFLLSTRAGGLGINLTAADTCIIYDSDWNPQIDLQAMDRCHRIGQTKPVHVYRLATAHSVEGRMLKRAFSKLKLEHVVIGKGQFHQERMKPNSMDNKEDEELLALLQEEESAEDKAIQTDISDEDLEKLLDRSDLVSGNLNCPSKIPLKGPGWEVVIPTGSMLSTLNS 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5390g00047 700 MobiDBLite consensus disorder prediction 1 37 - -
Pral5390g00047 700 Pfam Helicase conserved C-terminal domain 465 576 IPR001650 -
Pral5390g00047 700 Pfam SNF2-related domain 143 440 IPR000330 GO:0005524|GO:0140658
Pral5390g00047 700 FunFam ATP-dependent DNA helicase DDM1 134 379 - -
Pral5390g00047 700 Coils Coil 1 21 - -
Pral5390g00047 700 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 320 IPR014001 -
Pral5390g00047 700 SMART helicmild6 492 576 IPR001650 -
Pral5390g00047 700 SMART ultradead3 136 331 IPR014001 -
Pral5390g00047 700 CDD SF2_C_SNF 452 586 - -
Pral5390g00047 700 MobiDBLite consensus disorder prediction 59 98 - -
Pral5390g00047 700 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 466 622 IPR001650 -
Pral5390g00047 700 PANTHER SNF2/RAD54 HELICASE FAMILY 14 641 - -
Pral5390g00047 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 666 IPR027417 -
Pral5390g00047 700 Gene3D - 141 371 IPR038718 -
Pral5390g00047 700 MobiDBLite consensus disorder prediction 1 33 - -
Pral5390g00047 700 Coils Coil 110 130 - -
Pral5390g00047 700 FunFam Chromatin complex subunit A 106 380 607 - -
Pral5390g00047 700 Gene3D - 376 674 IPR027417 -
Pral5390g00047 700 MobiDBLite consensus disorder prediction 70 95 - -
Pral5390g00047 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 370 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5390g00047 Pral-Chr5390 223718 229349 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5390g00047 126 597 RAD5 or RAD16-like Gene Family AT3G16600 25.087 5.57e-33 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral5390g00047 SNF2_N 4.7e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5390g00047 K19001 - cave:132188478 1105.51